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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04703.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
M-type_MADS |
Protein Properties |
Length: 324aa MW: 36863.2 Da PI: 9.5588 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04703.1_g00005.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 48.6 | 1e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
ien++ r +t+ kR++g KKAeE+S+LC+ eva++ + +
Sme2.5_04703.1_g00005.1 10 YIENNTGRRITYRKRKKGFVKKAEEISTLCGSEVAIVRYNE 50
59**********************************98866 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MPRRKVNLAY IENNTGRRIT YRKRKKGFVK KAEEISTLCG SEVAIVRYNE FNKTPIVFPD 60 YEKVVNTFTK FKALSTTIQS EKMMSTTKFT MKKIDKMANG LQKLRKKNSI KEKENMMHDM 120 LDRNDIPIDM NSKDLNDLMF VMKQNFKKIR ELKIKVDEEG STSNISQPIS RSLTLGRTIS 180 ERTKTPLLDS SDGPTSVIPS MSNGIEIEDP RSSLLVPNVA PIWKNSMVSK LKVHSSAPTE 240 MLQYIVMTSL ISTPTIPQMD SSMNIPTIGA PMPMNSYVNN LDGFSHSPAS FESKDWNDDD 300 INSLFDDSYC NNINVEDSNN NNNW
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 2 | 24 | RRKVNLAYIENNTGRRITYRKRK |
2 | 21 | 25 | RKRKK |