PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04682.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 159aa    MW: 18758.2 Da    PI: 9.9804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04682.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.11.2e-5571351129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                              +ppGfrFhPtdeelv++yL+kk+++++ +l +v+kevd+yk+ePwdL+ ++ a e++ewyfFs++d+ky+tg+r+nrat +g+Wka
  Sme2.5_04682.1_g00003.1   7 VPPGFRFHPTDEELVDYYLRKKINSTRSDL-DVVKEVDLYKIEPWDLQGRIGAeEQNEWYFFSHKDRKYPTGTRTNRATIAGFWKA 91 
                              69*************************999.99***************766662556***************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              tg+dk+++s+ +el+g++ktLvfykgrap+g k+dW+mheyrle
  Sme2.5_04682.1_g00003.1  92 TGRDKAIYSRAHELIGMRKTLVFYKGRAPHGLKSDWIMHEYRLE 135
                              ******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-565139IPR003441NAC domain
PROSITE profilePS5100554.1657159IPR003441NAC domain
PfamPF023651.4E-288134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKIN STRSDLDVVK EVDLYKIEPW DLQGRIGAEE  60
QNEWYFFSHK DRKYPTGTRT NRATIAGFWK ATGRDKAIYS RAHELIGMRK TLVFYKGRAP  120
HGLKSDWIMH EYRLETHPNA VPQASCSSNS NFFSRKHFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-48613414140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754424e-84HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755154e-84HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599621.12e-88PREDICTED: NAC domain-containing protein 7-like
RefseqXP_009773837.11e-88PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016444884.12e-88PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX23e-82NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2G2X5B82e-87A0A2G2X5B8_CAPBA; NAC domain-containing protein 7
TrEMBLA0A4D6M3V61e-87A0A4D6M3V6_VIGUN; Uncharacterized protein
STRINGXP_009773837.14e-88(Nicotiana sylvestris)
STRINGXP_009599621.16e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-84NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]