PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04667.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9308.9 Da    PI: 11.9538
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04667.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krie+ks rq tfskRrng++KKA+  S+LCd++vav++fss+g+l+e+ss
  Sme2.5_04667.1_g00002.1  9 KRIEDKSSRQATFSKRRNGLMKKAKQFSILCDVDVAVLVFSSRGRLFEFSS 59
                             79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.772161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27263IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKSSRQAT FSKRRNGLMK KAKQFSILCD VDVAVLVFSS RGRLFEFSST  60
NRFWKPDRDS RARLIRSKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20161161Myocyte-specific enhancer factor 2B
1tqe_Q3e-20161161Myocyte-specific enhancer factor 2B
1tqe_R3e-20161161Myocyte-specific enhancer factor 2B
1tqe_S3e-20161161Myocyte-specific enhancer factor 2B
6c9l_A3e-20161161Myocyte-specific enhancer factor 2B
6c9l_B3e-20161161Myocyte-specific enhancer factor 2B
6c9l_C3e-20161161Myocyte-specific enhancer factor 2B
6c9l_D3e-20161161Myocyte-specific enhancer factor 2B
6c9l_E3e-20161161Myocyte-specific enhancer factor 2B
6c9l_F3e-20161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755176e-75HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352169.15e-35PREDICTED: agamous-like MADS-box protein AGL27
RefseqXP_010321013.16e-35agamous-like MADS-box protein AGL27
RefseqXP_010321014.16e-35agamous-like MADS-box protein AGL27
SwissprotA2Y9P01e-25MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-25MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A0V0HPI51e-34A0A0V0HPI5_SOLCH; Putative ovule protein
TrEMBLA0A0V0HZX31e-33A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like
STRINGSolyc05g015730.1.13e-36(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.41e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]