 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_04657.1_g00007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 214aa MW: 25013.1 Da PI: 5.1077 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_04657.1_g00007.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.7 | 5.3e-20 | 56 | 108 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k
Sme2.5_04657.1_g00007.1 56 KRKLSEEQVNLLEQSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 108
45899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 119.9 | 1.4e-38 | 55 | 146 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L
Sme2.5_04657.1_g00007.1 55 RKRKLSEEQVNLLEQSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKL 140
8************************************************************************************* PP
HD-ZIP_I/II 88 reelke 93
+e+l+e
Sme2.5_04657.1_g00007.1 141 KEQLNE 146
***986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MNHQVIEDDM LLISQYYPDI YTQLVPEQGE SKPRRRRKKN KSGEGSGSSD QMIMRKRKLS 60
EEQVNLLEQS FGNEHKLESE RKDRLAAELG LDPRQVAVWF QNRRARWKSK KLEEEYSKLK 120
SEHDNNVVEK CRLETEVLKL KEQLNESEKE IQRLLLERCD GLSTNTSPSA SSFSMEAAME 180
PPFLGEFGME GMDNVFYAQE NNYVQGLDWV NLYI
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 36 | 57 | RKKNKSGEGSGSSDQMIMRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC226001 | 1e-106 | AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence. |
| GenBank | HG975514 | 1e-106 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
