PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04651.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 389aa MW: 43219.6 Da PI: 6.2581 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 127.1 | 7.8e-40 | 167 | 263 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 lfqrlwse+Dei++L+G+id+++k++++p++d++af+ef+kks++++vsksql +KirrLKkK++++ k k+gke +fsk+h+qk Sme2.5_04651.1_g00003.1 167 LFQRLWSEDDEIAILKGMIDYRSKKKADPVADLSAFHEFIKKSLHVDVSKSQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQK 252 79************************************************************************************ PP DUF573 88 ifelskkiWgs 98 +elskkiWg+ Sme2.5_04651.1_g00003.1 253 GYELSKKIWGK 263 *********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.6E-36 | 168 | 262 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MAKNRPEEEE GESGEEMEVS SQEKADTESD SELESESEPE QEQPPKKPPV AAPKKPQPQD 60 SASSTEEESD SESEPETQKP NPVVKPIASK PMDEPKKAAP TAEKKSRSKA DATAKFISPK 120 KSAPVVGAKR PVDDGEAKES KRSKKKPEKE IETPVKKTPT DDVKRQLFQR LWSEDDEIAI 180 LKGMIDYRSK KKADPVADLS AFHEFIKKSL HVDVSKSQLQ DKIRRLKKKY ENNAGKEKKG 240 KERTFSKPHE QKGYELSKKI WGKEKSDKVQ EEVVKVENVT SSKGQSNSGS KDDGVLVVVK 300 VDKPSTEVEK TVEVTPNLSL ISCGGSVAAL EKWLDDHSGL LSVEKRNEIE EKSTSLKVTE 360 AGFCLRRVNL IAEQGELMRE VLKAAGFEI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363288.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | M1D1F7 | 0.0 | M1D1F7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079215 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 3e-23 | DNA-binding storekeeper protein-related transcriptional regulator |