PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_04606.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 84aa MW: 9583.69 Da PI: 4.6312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04606.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.2e-07	33	57	1	25
FAR1 1 kfYneYAkevGFsvrkskskkskrn 25 kfYneYA+++GFsvrk+ + +++ Sme2.5_04606.1_g00003.1 33 KFYNEYARRIGFSVRKEIAAEASKT 57 7**************9877665333 PP

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MCETTSEEVL QSNSQDYEPK FDLEFDTDKN ALKFYNEYAR RIGFSVRKEI AAEASKTDDG 60 YRIAVAFVND LSAKLKQIMK ATTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799718.1	2e-19	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016513209.1	1e-18	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4DIU7	3e-17	A0A1S4DIU7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7Y9D2	4e-18	A0A1U7Y9D2_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009799718.1	6e-19	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40