PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04532.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TALE | ||||||||
Protein Properties | Length: 341aa MW: 38347.3 Da PI: 6.2887 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 268 | 303 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ Sme2.5_04532.1_g00004.1 268 KKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 303 4679*****************************885 PP | |||||||
2 | ELK | 41.2 | 3.4e-14 | 223 | 244 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Sme2.5_04532.1_g00004.1 223 ELKGQLLRKYSGYLGSLKQEFM 244 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.3E-20 | 86 | 130 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.7E-23 | 88 | 127 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.7E-26 | 136 | 187 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-21 | 140 | 186 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 223 | 244 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.6E-11 | 223 | 244 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 223 | 243 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.054 | 243 | 306 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-13 | 245 | 310 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-19 | 245 | 320 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 248 | 307 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.49E-12 | 255 | 307 | No hit | No description |
Pfam | PF05920 | 4.0E-16 | 263 | 302 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 281 | 304 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEGGSSGNTN TSCLMMMGYG DHDNNHTGNG NATICPPPMM MMMPPPSLTN NNNAETSSNN 60 NNILFLPFMD NTNNNNPHED HSSSSSSIKS KIMAHPHYPR LLSAYLNCQK IGAPPEVVAR 120 LEELGATSAR IGSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE AMVFLSRIEC 180 QFKALTLAPN ESALGEAMDR NGSSDEEVDV NNSLIDPQAE DRELKGQLLR KYSGYLGSLK 240 QEFMKKRKKG KLPKEARQQL LDWWNRHKKW PYPSESQKLA LAESTGLDQK QINNWFINQR 300 KRHWKPSEDI QFVVMDAAHP HYYMDNVLAN HFPMDMTPSL L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 247 | LKQEFMKKRK |
2 | 244 | 248 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ477687 | 0.0 | KJ477687.1 Solanum tuberosum class I knox protein (POTH15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560169.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET6 isoform X2 | ||||
Swissprot | O22299 | 1e-174 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A2G2XFU8 | 0.0 | A0A2G2XFU8_CAPBA; Homeobox protein SHOOT MERISTEMLESS | ||||
STRING | PGSC0003DMT400043083 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-126 | KNOX/ELK homeobox transcription factor |