PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04517.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 1046aa MW: 116540 Da PI: 6.7179 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.4e-31 | 95 | 151 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s+fprsYY+Ct ++C +kk+ve+s+++p++++itYeg H h Sme2.5_04517.1_g00003.1 95 DDGYKWRKYGQKSIKNSPFPRSYYKCTNPRCGAKKQVEKSSDEPNTFIITYEGLHLH 151 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Hamap | MF_01458 | 32.924 | 23 | 1019 | IPR005936 | Peptidase, FtsH |
PROSITE profile | PS50811 | 26.463 | 89 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-28 | 90 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-25 | 91 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-36 | 94 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-25 | 95 | 151 | IPR003657 | WRKY domain |
Pfam | PF06480 | 1.7E-8 | 391 | 484 | IPR011546 | Peptidase M41, FtsH extracellular |
TIGRFAMs | TIGR01241 | 2.3E-202 | 496 | 995 | IPR005936 | Peptidase, FtsH |
SuperFamily | SSF52540 | 7.38E-68 | 555 | 802 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.2E-59 | 555 | 737 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00382 | 2.1E-20 | 591 | 731 | IPR003593 | AAA+ ATPase domain |
CDD | cd00009 | 8.18E-26 | 592 | 729 | No hit | No description |
Pfam | PF00004 | 5.7E-41 | 596 | 728 | IPR003959 | ATPase, AAA-type, core |
PROSITE pattern | PS00674 | 0 | 699 | 717 | IPR003960 | ATPase, AAA-type, conserved site |
Gene3D | G3DSA:1.10.8.60 | 4.7E-23 | 738 | 805 | No hit | No description |
Pfam | PF01434 | 1.1E-74 | 791 | 993 | IPR000642 | Peptidase M41 |
SuperFamily | SSF140990 | 1.57E-62 | 812 | 1003 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004222 | Molecular Function | metalloendopeptidase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1046 aa Download sequence Send to blast |
MLMEKYSWSY EDELIKELLD DESPFFLAPQ HDSTSSKSSI SSHDDIESGL SITSNGVLQS 60 HDARNLGLDM MMSKQEAHEA KYTLRIKTCG NAMADDGYKW RKYGQKSIKN SPFPRSYYKC 120 TNPRCGAKKQ VEKSSDEPNT FIITYEGLHL HFTYPFITLD PSQLLDQPNK KPKLTHSKAQ 180 NTSEVDESPK FVNPGPLGFG EMGSQELDFG GMGSQGLLED MVPLMGVGYG VRSAVVDEVA 240 ARGACITRVD GGLGFARTYL TLIGGGRQGL SKAYLSELDS VFASPKLRRF FCSQGPKRRN 300 YENYYPKNKK EIPKANNNQK AESGKEEGSS EQGNPQENFI KLNYNLITPL SFIGFILSSI 360 LMSPREQQES RVYNTCQNKY RFYYPIDDNF RHEISFQEFK NKLLEPGLVD RIVVTNKSVA 420 KVYVRSSAPS PDQIGDDTVQ VPVTGRNDRR NTSQYKYYFN IGSVESFEEK LEEAQEALRI 480 DPHNYVPVTY VDELNWFQEV MRFGPTVLLL AVLYFMGRRV QGGMGVGGPG GKGGRGIFNI 540 GKAHFTKMDK NAKNKVFFKD VAGCDEAKQE IMEFVHFLKN PKKYEQLGAK IPKGALLVGP 600 PGTGKTLLAK ATAGESGVPF LSISGSDFME MFVGVGPARV RSLFQEARQC APSIIFIDEI 660 DAIGRARGRG GFSGGHDERE STLNQLLVEM DGFATTSGVV ILAGTNRPDI LDKALLRPGR 720 FDRQITIDKP DIKGRDQIFL IYLNKLKLDH EASFYSQRLA ALTPGFAGAD IANVCNEAAL 780 IAARNESTII TMQHFEAAID RVIGGLEKKN KVISKLERRT VAYHESGHAV AGWFLEHAEP 840 LLKVTIVPRG TAALGFAQYV PNENLLMTKE QLFDVTCMTL GGRAAEQVLI GKISTGAQND 900 LEKVTKMTYA QVAVYGFSDK VGLLSFPQRD DGFEMSKPYS SKTAAIIDNE VREWVSKAYG 960 RTVQLIEEHK EHVAQIAELL LEKEVLHQED LVRVLGERPF KSHEPTNYDI FKQGFEEENK 1020 ETKDNPENKT VEDNGSPPVV PEVVPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6nyy_A | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
6nyy_B | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
6nyy_C | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
6nyy_D | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
6nyy_E | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
6nyy_F | 0.0 | 528 | 1022 | 11 | 502 | AFG3-like protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX839745 | 0.0 | JX839745.1 Solanum tuberosum clone StDT11 putative AAA-metalloprotease FtsH mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341014.1 | 0.0 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial | ||||
Swissprot | Q0DHL4 | 0.0 | FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial | ||||
TrEMBL | A0A3Q7I011 | 0.0 | A0A3Q7I011_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400022757 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2251 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 3e-39 | WRKY DNA-binding protein 49 |
Publications ? help Back to Top | |||
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