 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_04462.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NAC |
| Protein Properties |
Length: 232aa MW: 26776.1 Da PI: 10.0562 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_04462.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 29.3 | 2.4e-09 | 14 | 39 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26
lppGfrF+Ptdeelvv+yLk+ +e++
Sme2.5_04462.1_g00003.1 14 LPPGFRFRPTDEELVVQYLKRDMEQE 39
79*******************99876 PP
|
| 2 | NAM | 96.5 | 4.2e-30 | 37 | 112 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
e+e yfFs+r+ ky++g+r+nratksgyWkatg dk+++ + +++lvglkktLvfy+g++p+g +t+W+mheyrl
Sme2.5_04462.1_g00003.1 37 EQEKYFFSTREVKYPNGNRSNRATKSGYWKATGIDKQIILRgqQQQLVGLKKTLVFYRGKSPQGCRTNWIMHEYRL 112
5789***********************************99666667***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MEKVNFMKNG VLRLPPGFRF RPTDEELVVQ YLKRDMEQEK YFFSTREVKY PNGNRSNRAT 60
KSGYWKATGI DKQIILRGQQ QQLVGLKKTL VFYRGKSPQG CRTNWIMHEY RLANTESNNH 120
PIQGNWVICR IFLKRRGSIK NKEETMTTHD ESPLVLSKIC CRDRKTSNKE LQAENTRIIF 180
YDFMGESNSN GGAASSSSSG ITDLTTTVNG ESDDHEESTS SFNSFTTFRR KN
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-40 | 12 | 140 | 15 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-40 | 12 | 140 | 15 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
