PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04335.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 161aa    MW: 17817.3 Da    PI: 8.1294
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04335.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.81.2e-45111101100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq
  Sme2.5_04335.1_g00006.1  11 PCAACKLLRRRCGHDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQ 96 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+++la++++e
  Sme2.5_04335.1_g00006.1  97 IDMLRTQLAMAQAE 110
                              *********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.710111IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4511108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKECGKNSSS PCAACKLLRR RCGHDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP  60
EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVQLRLRQST  120
TITNSPPNSG SPIMGSQPKG YFHMDLDVDQ SNGINEPMWP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4871137113LOB family transfactor Ramosa2.1
5ly0_B8e-4871137113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-139HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-139HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233892.11e-116LOB domain-containing protein 4
SwissprotQ9SHE97e-63LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7F3831e-115A0A3Q7F383_SOLLC; Uncharacterized protein
STRINGSolyc02g069440.2.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-65LOB domain-containing protein 4