 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_04335.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
LBD |
Protein Properties |
Length: 161aa MW: 17817.3 Da PI: 8.1294 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_04335.1_g00006.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 145.8 | 1.2e-45 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+CaaCk+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq
Sme2.5_04335.1_g00006.1 11 PCAACKLLRRRCGHDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQ 96
7************************************************************************************* PP
DUF260 87 leqlkaelallkee 100
++ l+++la++++e
Sme2.5_04335.1_g00006.1 97 IDMLRTQLAMAQAE 110
*********99876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MKECGKNSSS PCAACKLLRR RCGHDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP 60 EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVQLRLRQST 120 TITNSPPNSG SPIMGSQPKG YFHMDLDVDQ SNGINEPMWP Y
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975441 | 1e-139 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
GenBank | HG975514 | 1e-139 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |