PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24263.8 Da PI: 9.6546

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04284.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	82	135	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq + Le+ F+ + ++ +++eLA+kl+L+ rqV vWFqNrRa+ k Sme2.5_04284.1_g00009.1 82 KKLRLTKEQSTLLEDSFKHHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 135 56689***********************************************98 PP
2	HD-ZIP_I/II	116.1	2e-37	82	168	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kk+rl+keq++lLE+sF+++++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL Sme2.5_04284.1_g00009.1 82 KKLRLTKEQSTLLEDSFKHHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENNRLKKELQEL 167 9************************************************************************************* PP HD-ZIP_I/II 88 r 88 r Sme2.5_04284.1_g00009.1 168 R 168 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	63	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.823	77	137	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	79	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-17	81	145	IPR009057	Homeodomain-like
CDD	cd00086	2.93E-13	82	138	No hit	No description
Pfam	PF00046	6.9E-16	83	135	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
SMART	SM00340	3.1E-17	137	180	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.2E-9	137	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MLPNKYDSDS SMGNDGNEAC DTRLTLGLAT SDHHKNVTCL DLSIVPLHFS DHGTNKINGS 60 SSKTCKSCSK FNSENKKIGM SKKLRLTKEQ STLLEDSFKH HTTLAMGQKQ ELAAKLKLKP 120 RQVEVWFQNR RARTKLKQTE VDCEFLKKWC QSLNDENNRL KKELQELRPI KIDQQAMPFY 180 LSKTRTLILC SSCQKILRDY TKEKHETGPE SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	3e-67	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027774347.1	1e-114	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	5e-45	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	M1DZM3	1e-118	M1DZM3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400096970	1e-119	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-43	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]