PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_04262.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 947aa MW: 105016 Da PI: 6.7859

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04262.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.2e-29	634	684	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Sme2.5_04262.1_g00002.1 634 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 684 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	623	704	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	637	684	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.15E-22	839	935	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-20	847	930	No hit	No description
Pfam	PF00564	6.7E-15	849	931	IPR000270	PB1 domain
PROSITE profile	PS51745	21.154	849	932	IPR000270	PB1 domain
SMART	SM00666	6.8E-22	849	932	IPR000270	PB1 domain
CDD	cd06407	3.24E-39	850	931	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MLLLNPSSHH HICFLVIASL QPHIHFKNLS QTKLLTNEVC GTQADWVLEQ QSFTEASDVI 60 MEHAPLTLND ILAKLSDNTA DFSDGFWLET TTHQGSNCFS QLDNLFAPQM DELSAPTTPL 120 DSSAQGTTPM NSRRLWIGAN SLTHPNPTSS VKMRLVQAIE YLKNSTRDKD VLIQIWVPVN 180 RGGKHVLVTH NQPYFLNPNS QSLLEYRNVS QNYQFAADKD SKELVGLPGR VFLKKLPEWT 240 PDVRFFKREE YPRVNYAHQH NVRGSIAVPV FESGSGTCLG VVEIVTTIQK THYHPELEDV 300 CRALEAVNLT SSGISSNPSK IKDCNESYLA ALAEIQYILT CVCDTHKLPL AQTWAPCVQQ 360 GKGGCLQSDE NFASCVSTVD SACYVRDPQV VPFHFACSEH HLLKGEGVAG GAFNTNQPCF 420 ATDITAFSKT EYPLSHHARM FGLCSAVAIR LRSIYTGSAD FVLEFFLPLD CKNTEDQKTM 480 LSSLSSVIQQ SCRSLCVVTD QELQEEKELL RREKVSLPIG GSHEEESRKP VSPPYRDQDA 540 SSWLSEIMDA QRKGKGAAAI SETHKDEQQE NFNVTATPWD YTQRESIHAS TFSEQNQNFE 600 PQGGSGGSFD FSSGTGSHSS GSKRAGERRR SKTEKSISLQ VLRQYFAGSL KDAAKSIGVC 660 PTTLKRICRQ HGITRWPSRK IKKVGHSLQK LQLVIDSVHG AEGAIKLSSF YTNFPELSSP 720 NNPGTSNFSA SKNDGHVQQV NSQPDGSPVT TTSKSTSSSG SHNSSSSLFC STGSKNLFPT 780 NNVFATTEEH PGGMLKRAHT ETELHDMGQE ETMLLVRSQS QKIQSNHNSV EPQCPLPTSS 840 NQVLRDSGTF KVKAIFGKEK IRFSLQSHWG FGDIQHEVLR RFNVEDVGKI DLKYLDDDDE 900 WVLLTCDADL EECIDIHKLS KRRTIKVSLH HTYHPNLESS FGSSGPA

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MLLLNPSSHH HICFLVIASL QPHIHFKNLS QTKLLTNEVC GTQADWVLEQ QSFTEASDVI  60
MEHAPLTLND ILAKLSDNTA DFSDGFWLET TTHQGSNCFS QLDNLFAPQM DELSAPTTPL  120
DSSAQGTTPM NSRRLWIGAN SLTHPNPTSS VKMRLVQAIE YLKNSTRDKD VLIQIWVPVN  180
RGGKHVLVTH NQPYFLNPNS QSLLEYRNVS QNYQFAADKD SKELVGLPGR VFLKKLPEWT  240
PDVRFFKREE YPRVNYAHQH NVRGSIAVPV FESGSGTCLG VVEIVTTIQK THYHPELEDV  300
CRALEAVNLT SSGISSNPSK IKDCNESYLA ALAEIQYILT CVCDTHKLPL AQTWAPCVQQ  360
GKGGCLQSDE NFASCVSTVD SACYVRDPQV VPFHFACSEH HLLKGEGVAG GAFNTNQPCF  420
ATDITAFSKT EYPLSHHARM FGLCSAVAIR LRSIYTGSAD FVLEFFLPLD CKNTEDQKTM  480
LSSLSSVIQQ SCRSLCVVTD QELQEEKELL RREKVSLPIG GSHEEESRKP VSPPYRDQDA  540
SSWLSEIMDA QRKGKGAAAI SETHKDEQQE NFNVTATPWD YTQRESIHAS TFSEQNQNFE  600
PQGGSGGSFD FSSGTGSHSS GSKRAGERRR SKTEKSISLQ VLRQYFAGSL KDAAKSIGVC  660
PTTLKRICRQ HGITRWPSRK IKKVGHSLQK LQLVIDSVHG AEGAIKLSSF YTNFPELSSP  720
NNPGTSNFSA SKNDGHVQQV NSQPDGSPVT TTSKSTSSSG SHNSSSSLFC STGSKNLFPT  780
NNVFATTEEH PGGMLKRAHT ETELHDMGQE ETMLLVRSQS QKIQSNHNSV EPQCPLPTSS  840
NQVLRDSGTF KVKAIFGKEK IRFSLQSHWG FGDIQHEVLR RFNVEDVGKI DLKYLDDDDE  900
WVLLTCDADL EECIDIHKLS KRRTIKVSLH HTYHPNLESS FGSSGPA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240198	0.0	AC240198.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence.
GenBank	AC246586	0.0	AC246586.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence.
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364358.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2G2XVS5	0.0	A0A2G2XVS5_CAPAN; Uncharacterized protein
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein