PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04243.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 326aa    MW: 35755.6 Da    PI: 8.3818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04243.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-121440127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++++ C++f++t  CkyG+rC+F+H++
  Sme2.5_04243.1_g00001.1 14 PGEPDCPYFMKTQKCKYGNRCRFNHPK 40
                             5789*********************96 PP
2zf-CCCH40.54.7e-136387327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             +++C f+++tGtCk+G++CkF+H++
  Sme2.5_04243.1_g00001.1 63 EPPCTFYLKTGTCKFGATCKFHHPR 87
                             79*********************96 PP
3zf-CCCH35.61.6e-11137163127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C+f+ +tG CkyG++C+++H++
  Sme2.5_04243.1_g00001.1 137 PGEVDCPFYVKTGSCKYGGTCRYNHPE 163
                              57899********************96 PP
4zf-CCCH43.84.3e-14218241326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              + +C+f+++tG+CkyG+rCkF+H+
  Sme2.5_04243.1_g00001.1 218 QIECDFYMKTGECKYGERCKFHHP 241
                              568********************9 PP
5zf-CCCH38.22.4e-12275296627
                              -SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                              C+++++tG CkyG++CkF H+p
  Sme2.5_04243.1_g00001.1 275 CPYYMKTGMCKYGATCKFDHPP 296
                              ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0091341IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-61340IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-101540IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-61842IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-51939IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4086088IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-66087IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-106387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-66488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-66587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662136164IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6136163IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5140164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507215243IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7215242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7218243IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-11219241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6221241IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319269297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6273296IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9275296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5275294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQVPVTTESL PERPGEPDCP YFMKTQKCKY GNRCRFNHPK DNTAHLGSQQ NPGVSELPER  60
PSEPPCTFYL KTGTCKFGAT CKFHHPRDIQ LPSPKPENGS GDKPGSANNA MTVDVNLVKP  120
LSVPALLHNS KGLPIRPGEV DCPFYVKTGS CKYGGTCRYN HPERNAAGTG AALVTSPATH  180
WNIGMVNPAT SFLQNFDPRL THTMLGLLPP VYPQRPGQIE CDFYMKTGEC KYGERCKFHH  240
PLDRSVSSVS VKDVHQPNVK LTLAGLPRRE GAVHCPYYMK TGMCKYGATC KFDHPPPGEV  300
LGMATSQGAS LSVEREDNVD ANGQQQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754514e-76HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541686.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-131C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1U8E5J00.0A0A1U8E5J0_CAPAN; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2G2ZX900.0A0A2G2ZX90_CAPAN; zinc finger CCCH domain-containing protein 37 isoform X1
STRINGXP_009782011.10.0(Nicotiana sylvestris)
STRINGXP_009601117.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-131floral homeotic protein (HUA1)