PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04162.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 958aa MW: 103803 Da PI: 6.6774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 681 | 705 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg Sme2.5_04162.1_g00001.1 681 FKTKLCCKFRA-GVCPYITNCNFAHG 705 69*********.*************8 PP | |||||||
2 | zf-CCCH | 41.3 | 2.6e-13 | 816 | 841 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Sme2.5_04162.1_g00001.1 816 WKTRICNKWEMTGYCPFGNKCHFAHG 841 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53613 | 1.24E-19 | 155 | 296 | IPR029056 | Ribokinase-like |
CDD | cd01168 | 9.59E-81 | 157 | 539 | No hit | No description |
Gene3D | G3DSA:3.40.1190.20 | 8.7E-52 | 197 | 279 | IPR029056 | Ribokinase-like |
Pfam | PF00294 | 3.1E-11 | 198 | 286 | IPR011611 | Carbohydrate kinase PfkB |
SuperFamily | SSF53613 | 7.48E-34 | 347 | 538 | IPR029056 | Ribokinase-like |
Pfam | PF00294 | 2.7E-21 | 364 | 538 | IPR011611 | Carbohydrate kinase PfkB |
Gene3D | G3DSA:3.40.1190.20 | 8.7E-52 | 367 | 536 | IPR029056 | Ribokinase-like |
PROSITE pattern | PS00584 | 0 | 493 | 506 | IPR002173 | Carbohydrate/puine kinase, PfkB, conserved site |
SuperFamily | SSF90229 | 2.35E-7 | 678 | 711 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-14 | 678 | 713 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 680 | 706 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.418 | 680 | 707 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 681 | 705 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 755 | 783 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-8 | 755 | 784 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 756 | 783 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 756 | 784 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-9 | 812 | 843 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-15 | 812 | 842 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-9 | 815 | 842 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 815 | 843 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 816 | 841 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MSFSLLSLSS SSSSAVSRTF PSFFSSETSS PPSTLLTLLR NQSNFSHVGS SNRIFGSSSC 60 SFFSSGCSLS AADYVVPRAF SSSFESEFSS SRRNSEGESS DIGSGENGEQ GAETDDEDQG 120 HVLSEIKFRH IMSNHLPQYF FGLPLPLCVA PKTSLYVDFS GMVDDEFLER LGLEKGTRKV 180 VNHEERGKVL SAMDGCSYKA AAGGSLSNSL VALARLGGQT TAGPALNVAL AGSVGSDPLG 240 GFYRSKLRRA NVNFLSAPVK DGTTGTVIVL TTSDAQRTML AYQYAQLVPG ADDPWFKGKS 300 SLINSSDEPF SFCFLVLTCN DPVKVGSSLY RFFSYFKSTR PSVIAAFCFG MGTSSRINYD 360 PCLADAITKT NILVVEGYLF ELPDTVRTIS KVCEKARKCG ALVAITASDV SCIERHYDDY 420 WEIMANYADI VFANSAEARA FCHFSSKESP LSATRYLSHF VPLVSVTDGP KGSYIGVKGE 480 AIYIPPFPCM PVDTCGAGDA YASGILYGIS RGVSDLKSIG SIAAQVASVV VGQQGTRLRV 540 QDAIRLAESF SVHCRNSTIW SDIGSDQISS FIFFLMILSI FGWEFWFFMD FMGEDSVAGG 600 SDVSGFDNWG PGITDQAVWA TEDDYRAWNT GLSSETPSNS SQDGRHSQNR STSEPPHKKS 660 RNSQGVDSVS NRSKAIGKMF FKTKLCCKFR AGVCPYITNC NFAHGIEELR KPPPNWQDIV 720 AAHESERGGG VMLEPREEHQ IPTASSPELR AESQRSYKGR HCKKFHTEEG CPYGDACTFL 780 HAEQSRARES VAISVTPTVG GFGNNAAGAN LKPSNWKTRI CNKWEMTGYC PFGNKCHFAH 840 GAAGLAPNSI WIFDLVLISA IFLAELHKYG GGLVEMEGTD SLSTPPDTKQ GGGPFKTAES 900 TVPSTISAPR ADVYHLGSGV HVQRPSGIVQ RTGQRVLHKW KGPEKVSKIY GDWIDDIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ubo_A | 3e-13 | 365 | 537 | 147 | 317 | adenosine kinase |
3ubo_B | 3e-13 | 365 | 537 | 147 | 317 | adenosine kinase |
4kad_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kad_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kah_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kah_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kal_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kal_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kan_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kan_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kbe_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4kbe_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lbg_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lbg_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lbx_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lbx_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lc4_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lc4_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lca_A | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
4lca_B | 4e-13 | 364 | 537 | 166 | 337 | Probable sugar kinase protein |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-162 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-162 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-113 | C3H family protein |