 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_04124.1_g00010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
LBD |
| Protein Properties |
Length: 179aa MW: 19920.9 Da PI: 4.6474 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_04124.1_g00010.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 138.5 | 2.3e-43 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q
Sme2.5_04124.1_g00010.1 27 PCAACKILRRRCAEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQ 112
7************************************************************************************* PP
DUF260 87 leqlkaelallkee 100
+++l+ae a++++e
Sme2.5_04124.1_g00010.1 113 ISELQAEFAKAQAE 126
**********9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MECSDYKSTC TISSSSLSTP PMVVLSPCAA CKILRRRCAE KCVLAPYFPP TDPIKFTIAH 60
RVFGASNIIK MLQELPEEQR ADAVNSMVYE ANARIRDPVY GCAGAICQLQ KQISELQAEF 120
AKAQAEILNL KCQNSNLLAL VCMEVSQNST TNINDYENND ISMLLEDNNV YAAWEPLWT
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975444 | 7e-86 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
