 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_04105.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GATA |
| Protein Properties |
Length: 303aa MW: 33762.7 Da PI: 8.3291 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_04105.1_g00002.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 54.1 | 2.1e-17 | 224 | 258 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+Cg+ Tp+WR gp g+ktLCnaCG+++++ +l
Sme2.5_04105.1_g00002.1 224 CSHCGVQRTPQWRTGPMGTKTLCNACGVRFKSGRL 258
*******************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MLYRTTTPHS SSSSSSSSSL QALEMIHQHS SVDEFFVDNL LDLSNGFYED EIEQFDEHPN 60
GFNGEKPCSV SPQKKMEAEI EKLDDEKPCS VSTQKKMEAE NEDLGYELSF RENGLDNLEW 120
LSQFVEEDSC SGYSLMTGKL PENKNQSATE KKKIHVQGKS CFPGPVQTKP RTQRGRIGGR 180
VWSLTGSSTS SASSSTTTTT AESVVRLNKR RKTMAEKPVQ PRRCSHCGVQ RTPQWRTGPM 240
GTKTLCNACG VRFKSGRLLP EYRPACSPTF SSERHSNSHR KVLEMRQKKE AGTGGLAPPV 300
HSF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
