PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 303aa MW: 32063.1 Da PI: 5.9703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04079.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	151	195	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L Sme2.5_04079.1_g00005.1 151 HSIAERLRRERIAERIRALQELVPSvN------KTDRAIMLDEIVDYVKFL 195 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-15	144	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.91	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	148	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	151	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MANNPSEGPS DDFFDQILGF PAYNGAEPNL AGNDAGAIPP AMMLQLNSGD GSGQFSGVGL 60 GVGLGGGGGF HGHGGAASFP LGLSLEQGKG GFLKMDDGSA PGRRFRDDVV DSRASSSVKP 120 GFHGQPMPSM PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD 180 RAIMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PISSVEEESS EGGNNNQPAW 240 EKWSSDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHSQPPD TSSLVKPETN 300 PPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214210	1e-152	AC214210.1 Solanum lycopersicum chromosome 9 clone C09HBa0135N15, complete sequence.
GenBank	HG975448	1e-152	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-152	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349737.1	0.0	PREDICTED: transcription factor UNE12
Swissprot	O22768	1e-125	UNE12_ARATH; Transcription factor UNE12
TrEMBL	M1BPA8	1e-180	M1BPA8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400049768	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5799	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-90	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]