 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_03973.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
bHLH |
| Protein Properties |
Length: 276aa MW: 31556.7 Da PI: 9.7548 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03973.1_g00006.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 25.5 | 2.4e-08 | 114 | 161 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+Er+RR+++ + +++Lr l+P+ +K ++ L++ v+Y+k+L
Sme2.5_03973.1_g00006.1 114 RRDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRAISDHLKEIVDYVKDL 161
5689*********************77...999****************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MDDSEFDFSQ LDQLFDFLSS PPPPPPTTLQ NQDSSISFQT QNSNLLTTST HHVPKMKPII 60
TNHVIKNKPI LTTNIDIVDD QVQGSPKEKR PRLLRKAAVE NFPEMVVDKK KVLRRDVERQ 120
RRRDMAKLYQ RLRLLIPSKY LMGKRAISDH LKEIVDYVKD LRKNIEDLEI KKEKLKEMAN 180
NICSSQLTPC STSMKIIDDD EDRIIVKSCN DGVEISIKGG ISLSKVLKVL MKEGLNVNSC 240
VSSTVDQRLI HIIQSKVNTR GDIDLSMLRS KLMSLF
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975446 | 5e-94 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
