 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_03973.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
bHLH |
| Protein Properties |
Length: 283aa MW: 32441 Da PI: 6.2604 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03973.1_g00005.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 32.6 | 1.4e-10 | 73 | 123 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ + +Er+RR+++ + +++Lr l+P+ +K s ++ Le+ v+Y+k+L
Sme2.5_03973.1_g00005.1 73 KTVRKDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYVKDL 123
677889**********************77...9******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDGFEFDFSQ LDQLFDILSP PINTFENQDP SIISSQTQTQ TSNDENKSII TITSTLIDDD 60
QIQDPPKEKE KKKTVRKDVE RQRRRDMAKL YQRLRLLIPS KYLMGKRSIS DHLEEIVDYV 120
KDLRKNIEDL ERKREILKEM KNNICNSQLT PCSSSDNDDR ITVKSCNDGV EISIKGGLSL 180
SKVLKVLMKE GLNVNSCVSS TVDQSLHHII QSKGLIIHIL VIPSAETDDF ASVFSCLEWA 240
TQLASMRHED SPDPLPPNSL VSNRQLNWLL HVMRMVRAQY LPR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975519 | 1e-35 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
