 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_03916.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 259aa MW: 29636.3 Da PI: 8.661 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03916.1_g00005.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.2 | 2.9e-18 | 113 | 167 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L rqV vWFqNrRa+ k
Sme2.5_03916.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 167
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 115.3 | 3.6e-37 | 113 | 201 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rl+keq +LE+sF+++++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+d+e L++ y++l+een+rL ke ++
Sme2.5_03916.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKYYEELEEENRRLIKEIQD 198
69************************************************************************************ PP
HD-ZIP_I/II 87 Lree 90
L+ +
Sme2.5_03916.1_g00005.1 199 LK-S 201
*9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MICNTRLSLS LGSSSLPHQN NKRKLSTNDD NQELALCLST SSEFTNNCDN RINPQLLGGV 60
NSSVSSFSNT SSVKRERDAS SIEEEVEILE SKKAVLISPK GLVDDDDDDY RTRKKLRLTK 120
EQYDVLEDSF KQHTTLNSKQ KRDLARRLSL RPRQVEVWFQ NRRARTKLKQ TEVDCEILRK 180
YYEELEEENR RLIKEIQDLK SLKMSAPFRV QLSAATLSIC PSCERNYGGA AATDNSKKIS 240
FSIGDQKPHV YHGIHHQLC
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 110 | 116 | RTRKKLR |
| 2 | 111 | 117 | TRKKLRL |
| 3 | 161 | 169 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975516 | 1e-118 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
