PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03886.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 29218.2 Da PI: 8.6438 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.2e-51 | 12 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLp k ++kewyfF+ r +ky+++ r+nr+tksg+Wkatg Sme2.5_03886.1_g00002.1 12 LPGFRFHPTDEELVGFYLRRKVENKRINI-ELIKQIDIYKYDPWDLP---KVGDKEWYFFCMRGRKYKNSVRPNRVTKSGFWKATG 93 69***************************.89***************...4489******************************** PP NAM 88 kdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 dk+v+s++++ +glkk Lv+y+g+a kg+ktdW+mhe+rl Sme2.5_03886.1_g00002.1 94 IDKPVYSTQQQCciIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 136 *******6554477***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-54 | 10 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.355 | 11 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 13 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSKEENEEDV ILPGFRFHPT DEELVGFYLR RKVENKRINI ELIKQIDIYK YDPWDLPKVG 60 DKEWYFFCMR GRKYKNSVRP NRVTKSGFWK ATGIDKPVYS TQQQCCIIGL KKCLVYYRGS 120 AGKGTKTDWM MHEFRLPPTS NPHAEVWTLC RILKRTSKRS SSYNTQEVMK HPISFKDMTF 180 QQENYNNYAA QMDEIRNQQN LISLESTLAS SSSSFWNTNS QEEYLLSDNY ENKWDDLKSI 240 VDLATMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 13 | 157 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 13 | 157 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 13 | 157 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 13 | 157 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-48 | 13 | 157 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 13 | 157 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 13 | 157 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 6e-87 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159594.1 | 1e-138 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 8e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M0ZL44 | 1e-137 | M0ZL44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003082 | 1e-137 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-84 | NAC domain containing protein 42 |