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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03646.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 672aa MW: 73913.1 Da PI: 8.2938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3.1e-13 | 70 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a++k++g Sme2.5_03646.1_g00001.1 70 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQKFRG 118 78****9888.8*********3.....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-17 | 70 | 126 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.80E-25 | 70 | 125 | No hit | No description |
Pfam | PF00847 | 7.5E-9 | 70 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 71 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-20 | 71 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.31 | 71 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-11 | 124 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-7 | 165 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.713 | 176 | 212 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF55920 | 3.27E-82 | 393 | 671 | IPR000994 | Peptidase M24, structural domain |
Hamap | MF_01974 | 39.654 | 427 | 672 | IPR002467 | Peptidase M24A, methionine aminopeptidase, subfamily 1 |
Gene3D | G3DSA:3.90.230.10 | 5.2E-95 | 428 | 671 | IPR000994 | Peptidase M24, structural domain |
TIGRFAMs | TIGR00500 | 1.3E-81 | 429 | 671 | IPR002467 | Peptidase M24A, methionine aminopeptidase, subfamily 1 |
CDD | cd01086 | 8.55E-134 | 435 | 670 | No hit | No description |
Pfam | PF00557 | 4.8E-50 | 437 | 663 | IPR000994 | Peptidase M24, structural domain |
PRINTS | PR00599 | 2.1E-18 | 492 | 505 | IPR001714 | Peptidase M24, methionine aminopeptidase |
PRINTS | PR00599 | 2.1E-18 | 514 | 530 | IPR001714 | Peptidase M24, methionine aminopeptidase |
PRINTS | PR00599 | 2.1E-18 | 584 | 596 | IPR001714 | Peptidase M24, methionine aminopeptidase |
PROSITE pattern | PS00680 | 0 | 590 | 608 | IPR002467 | Peptidase M24A, methionine aminopeptidase, subfamily 1 |
PRINTS | PR00599 | 2.1E-18 | 614 | 626 | IPR001714 | Peptidase M24, methionine aminopeptidase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004177 | Molecular Function | aminopeptidase activity | ||||
GO:0008235 | Molecular Function | metalloexopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MEGSSSIDQE STTSDSLSIA PTASSSMILP PSTTIKSPPE QSLCRMGSGT SVIIDAENGI 60 EAESRKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EENEAARAYD VAAQKFRGRD 120 AVTNFKPLLE SQESDDMEIA FLNSHSKAEI VDMLRKHTYL DELEQSKKLF GFTKDGWSRF 180 VKEKNLKAGD VVSFQRSTSG DKQLYIDFKA KNLMATSTVV TNQVQAQVQI PQTSCSPVGP 240 SGALVELVME GSGCPIVPPG HLGFLLGSLQ TDRYNILGKL SRIPKQHHKL WANTHEKLLK 300 SLIAWPIKSY HESFGAAGPP GALVRLVKDG SMRLAAPSGH LRLLSCSLQM GKNANFTKKF 360 VIYAKRLSGL EEALRIKRER ELRGSTTATR RPPLRRGRVS QRLPVPDDIP KPPYVGSREL 420 PGISPEHQIH DAEGIARMRA ACELAARVVD YAGTLVRPSV TTNEIDKAVH QMIIDAGAYP 480 SPLGYGGFPK SVCTSVNECM CHGIPDSRQL QNGDIINIDV TVYLNGYHGD TSKTFFCGDV 540 SESIKRLVKV TEECLHYGIA LCRDGALYRK IGKRISEHAE KFGYGVVDRF VGHGIGTVFH 600 SEPLIFHHRN DKSGSMVEGQ TFTIEPILTL GSTECVTWED NWTTLTADGS PAAQFEHTIL 660 ITKTGAEILT TY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2g6p_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4fli_A | 4e-80 | 404 | 670 | 19 | 293 | Methionine aminopeptidase 1 |
4flj_A | 4e-80 | 404 | 670 | 19 | 293 | Methionine aminopeptidase 1 |
4flk_A | 4e-80 | 404 | 670 | 19 | 293 | Methionine aminopeptidase 1 |
4fll_A | 4e-80 | 404 | 670 | 19 | 293 | Methionine aminopeptidase 1 |
4hxx_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4u1b_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4u69_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4u6c_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4u6e_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
4u6j_A | 4e-80 | 404 | 670 | 18 | 292 | Methionine aminopeptidase 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-171 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7GDP5 | 0.0 | A0A3Q7GDP5_SOLLC; Methionine aminopeptidase |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3218 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 2e-65 | related to ABI3/VP1 1 |