PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03608.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-PHD
Protein Properties Length: 726aa    MW: 82154.3 Da    PI: 7.7889
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03608.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.35.5e-13505552653
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                              +f ++ +eeL ++F+ n  ps+e+re L+k+lgL+ ++V  WF+N R+
  Sme2.5_03608.1_g00003.1 505 RFPPDAVEELRRVFADNELPSREMRENLSKQLGLEFEKVNKWFKNARY 552
                              578999*****************************************8 PP
2PHD34.25.7e-12238293151
                              SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                      PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                              +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  Sme2.5_03608.1_g00003.1 238 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 293
                              588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-14230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-11234294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211236293IPR019787Zinc finger, PHD-finger
PfamPF006283.1E-9238293IPR019787Zinc finger, PHD-finger
SMARTSM002492.5E-9238291IPR001965Zinc finger, PHD-type
CDDcd155044.85E-30239290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.1E-14493551IPR009057Homeodomain-like
PROSITE profilePS5007113.621497557IPR001356Homeobox domain
SMARTSM003891.9E-13499561IPR001356Homeobox domain
CDDcd000862.91E-11500552No hitNo description
SuperFamilySSF466891.75E-12500563IPR009057Homeodomain-like
PfamPF000462.0E-10505552IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MHKAVPSSSQ VRNVLRKLEK KRSKLKSKSR GRSSHASSSK RAVPNDGKGK NCSGENILKK  60
EIQKKAKSSK KQSVLSCQGE KLQACNSKDN KHENLDTGSE KLKRRRKRRR RKHNEDPDEV  120
SRLQRRTRYL LIKMKLEQNL IDAYSAEGWK GQRPGQSSPY ELDFGVELGA AHVTTSVFSS  180
SREKIRPERE LQRAKKQIIN CKLGIREIVH HLDLLSSPGQ IDDSAIAPDG SVHHEHIICA  240
KCKLQEAFPD NDIILCDGTC NCAFHQKCLD PPLSTENIPP DDEGWFCKFC KCKMEIIEAT  300
NAHIGTHFAM DSNWENIFKE EALLPEGEES LLRPEQDWPS DDSEDDDYDP EKVANSHSST  360
DSFESDSSSE ASSGSMFGSL EDELLALTGK TEDGIGGKDN LSEQIGSDYE ETTDFEVISG  420
PRQRKAVDYI KLNDEMFGKH APLIEQNSED EDWGPGKRKR RRKEPESDAA STLITLFESE  480
KSPEKIANDV EKDSLGKPAK REIFRFPPDA VEELRRVFAD NELPSREMRE NLSKQLGLEF  540
EKVNKWFKNA RYTALKARKV ESTKLGQATS PTTSIGCIPE TVEGEPADHI SSSNAAENAA  600
QAPNEETPNL VIRPSKKKHD KRVVKPSADK VETLIESGDD VSLKLLRERA KKQRRKLNSK  660
EREKIQEAEA EAEAEMQKLC RIKDKIARLQ DVLQRFQKRR CRRSNTSSLD ELLVVYIPVA  720
ELQEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRRKRRRRK
2456461KRKRRR
3456462KRKRRRK
4457461RKRRR
5457463RKRRRKE
6696702QKRRCRR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-170HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-170HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080840.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-144PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7H4G00.0A0A3Q7H4G0_SOLLC; Uncharacterized protein
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-137pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]