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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03548.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 26153.6 Da PI: 9.0814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.4e-06 | 62 | 81 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Sme2.5_03548.1_g00002.1 62 FACNICNKTFNRYNNMQMHM 81 78*****************9 PP | |||||||
2 | zf-C2H2 | 17.4 | 1.3e-05 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ Sme2.5_03548.1_g00002.1 146 FSCRKCGKTFAVKGDWRTHEKNC 168 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.71E-6 | 48 | 85 | No hit | No description |
Pfam | PF12874 | 1.6E-4 | 62 | 81 | No hit | No description |
PROSITE profile | PS50157 | 10.783 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.9E-6 | 62 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.095 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 109 | 141 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.53E-5 | 132 | 166 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 132 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 32 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEKVRVSLHI GLPDVDEAKP FKEEENKEKH SSTIVNKGCN FNSESRFWIP TPAQILVGPM 60 QFACNICNKT FNRYNNMQMH MWGHGSEYRK GPESLRGTQP AAMLRLPCYC CAQGCKNNIN 120 HPRAKPLKDF RTLQTHYKRK HGTKSFSCRK CGKTFAVKGD WRTHEKNCGK LWYCTCGSDF 180 KHKRSLKDHI RSFGKGHSPH PSLGGFDDKD YCINNSTGGS SDDDDDEMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241317.1 | 1e-157 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 1e-107 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A3Q7GZU7 | 1e-156 | A0A3Q7GZU7_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018308 | 1e-144 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-110 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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