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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_03484.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 423aa MW: 45808.6 Da PI: 8.2004 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_03484.1_g00004.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 45 | 68 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++C+f++rtG C yG++C+++H+
Sme2.5_03484.1_g00004.1 45 APNCSFYMRTGSCGYGAKCRYNHP 68
589********************9 PP
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2 | zf-CCCH | 38.4 | 2e-12 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C++++rtGtCk+G++CkF+H++
Sme2.5_03484.1_g00004.1 89 EPTCQYYLRTGTCKFGASCKFHHPR 113
689********************96 PP
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3 | zf-CCCH | 37.2 | 4.9e-12 | 134 | 158 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++C+++++tG+Ck+G +CkF+H+
Sme2.5_03484.1_g00004.1 134 EERECSYYLKTGQCKFGITCKFHHP 158
5799********************9 PP
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4 | zf-CCCH | 41.3 | 2.6e-13 | 288 | 313 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+++++tG Ck+G++CkF+H+
Sme2.5_03484.1_g00004.1 288 PGQPVCQYYMKTGDCKFGSSCKFHHP 313
5789*********************8 PP
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5 | zf-CCCH | 36.8 | 6.6e-12 | 335 | 360 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ +C+f+++ G+Ck+G++CkF H++
Sme2.5_03484.1_g00004.1 335 GVQPCSFYMQRGFCKFGGTCKFDHPM 360
6789********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 2.9E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.108 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 45 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 46 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 48 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-10 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-5 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 138 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-7 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.173 | 287 | 315 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 289 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-6 | 292 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-7 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 335 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 337 | 358 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MEPYGRSPSD QQSDWVPVGP ETGLEESMRR LGLWSREAYP ERPGAPNCSF YMRTGSCGYG 60 AKCRYNHPDR SSVSAVLLER SEYPERIGEP TCQYYLRTGT CKFGASCKFH HPRNLGGSLS 120 NISLNVCGYP LHPEERECSY YLKTGQCKFG ITCKFHHPDP AEVSALATAH PFYPAVSSLP 180 APPEEYNSTS TSSTVARPQL LPGSYVPGTY GPVLLHPGLV IQNWSTYSGP VSPALSPGVQ 240 PSAGIASMYG ISQLASATAA FAGPYSPLHS AAGPSSSALR EKRFPERPGQ PVCQYYMKTG 300 DCKFGSSCKF HHPADWITSN TNCALSPLGL PLRPGVQPCS FYMQRGFCKF GGTCKFDHPM 360 GTVHYSPSAS SLPDISNAPY ISGSSLTLAP AIHRQSNYPD LFQDPRRIPP HSVASGTSSI 420 PNM
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975518 | 1e-104 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |