PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03484.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 423aa    MW: 45808.6 Da    PI: 8.2004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03484.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-114568326
                             S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                              ++C+f++rtG C yG++C+++H+
  Sme2.5_03484.1_g00004.1 45 APNCSFYMRTGSCGYGAKCRYNHP 68
                             589********************9 PP
2zf-CCCH38.42e-1289113327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C++++rtGtCk+G++CkF+H++
  Sme2.5_03484.1_g00004.1  89 EPTCQYYLRTGTCKFGASCKFHHPR 113
                              689********************96 PP
3zf-CCCH37.24.9e-12134158226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++C+++++tG+Ck+G +CkF+H+
  Sme2.5_03484.1_g00004.1 134 EERECSYYLKTGQCKFGITCKFHHP 158
                              5799********************9 PP
4zf-CCCH41.32.6e-13288313126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C+++++tG Ck+G++CkF+H+
  Sme2.5_03484.1_g00004.1 288 PGQPVCQYYMKTGDCKFGSSCKFHHP 313
                              5789*********************8 PP
5zf-CCCH36.86.6e-12335360227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +  +C+f+++ G+Ck+G++CkF H++
  Sme2.5_03484.1_g00004.1 335 GVQPCSFYMQRGFCKFGGTCKFDHPM 360
                              6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1084270IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-94568IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-54669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-44867IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96286114IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-1089113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-592113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882133160IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5134159IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4138157IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173287315IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6292313IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502333361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6335362IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4337358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEPYGRSPSD QQSDWVPVGP ETGLEESMRR LGLWSREAYP ERPGAPNCSF YMRTGSCGYG  60
AKCRYNHPDR SSVSAVLLER SEYPERIGEP TCQYYLRTGT CKFGASCKFH HPRNLGGSLS  120
NISLNVCGYP LHPEERECSY YLKTGQCKFG ITCKFHHPDP AEVSALATAH PFYPAVSSLP  180
APPEEYNSTS TSSTVARPQL LPGSYVPGTY GPVLLHPGLV IQNWSTYSGP VSPALSPGVQ  240
PSAGIASMYG ISQLASATAA FAGPYSPLHS AAGPSSSALR EKRFPERPGQ PVCQYYMKTG  300
DCKFGSSCKF HHPADWITSN TNCALSPLGL PLRPGVQPCS FYMQRGFCKF GGTCKFDHPM  360
GTVHYSPSAS SLPDISNAPY ISGSSLTLAP AIHRQSNYPD LFQDPRRIPP HSVASGTSSI  420
PNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-104HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366677.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-163C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1A3480.0M1A348_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-165C3H family protein