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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_03471.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 182aa MW: 20827.5 Da PI: 9.8848 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_03471.1_g00002.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 90.8 | 1e-28 | 74 | 134 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60
++Dgy+WrKYGqK+ +++++pr++++C++a +Cpvkkkv+r+ +d+++++ tYegeHnh+k
Sme2.5_03471.1_g00002.1 74 VKDGYEWRKYGQKVTRDNPYPRAFFKCSFApTCPVKKKVQRCVDDKSIIVATYEGEHNHSK 134
58***************************99****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MSNCTASGMS RKRKAENVGL FDARFHGINS ELSDEDLSCN KARLVHHDHF QPKKINYTRY 60 VRTTQASHDT ALIVKDGYEW RKYGQKVTRD NPYPRAFFKC SFAPTCPVKK KVQRCVDDKS 120 IIVATYEGEH NHSKELLETG EGSSDQLVNG NRRISTSITA VGHSHNKQPE FHKLLKTKWL 180 HP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975524 | 1e-34 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |