PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ERF

Protein Properties

Length: 253aa MW: 28769.8 Da PI: 6.0436

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03441.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.7e-18	79	128	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a+++++g Sme2.5_03441.1_g00007.1 79 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALAIKG 128 69**888.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.7E-31	79	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-21	79	137	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.037	79	136	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-12	79	128	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-35	79	142	IPR001471	AP2/ERF domain
CDD	cd00018	5.31E-33	80	138	No hit	No description
PRINTS	PR00367	3.1E-10	80	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-10	102	118	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MENQEDTINL ENRHDFISHG LNSPLSTTTS SLSSSSSSFF SSSNALISVK CQDSKKIQNF 60 VQNEEKKRND EKDDDKHPTY RGVRKRSWGK WVSEIREPRK KSRIWLGTYP TAQMAARAHD 120 VAALAIKGCS AHLNFPHLVD KYPRPASTSH KDTQAAAAKA AAITFPEEEE DRVNPNRVEL 180 RNCHSTTNLF LENTKESLNS PSREDDDTFF DLPDLSIDVV DQNNSHWCTM STWQQLIGAD 240 TTVYRLDEPL LWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-18	77	137	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-179	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075712.1	1e-124	ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	3e-50	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	M1AA09	1e-119	M1AA09_SOLTU; Uncharacterized protein
STRING	Solyc05g050830.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-46	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]