PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03411.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family YABBY
Protein Properties Length: 176aa    MW: 19799.4 Da    PI: 9.5637
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03411.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY228.91.3e-7071704170
                    YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 
                               ssse+vCy+qCnfCntilav+vP + ++++vtvrCGhC++lls n+    q+ + ++   ++l+ ++  + +++ +n+  + +++
  Sme2.5_03411.1_g00006.1   7 SSSSERVCYLQCNFCNTILAVNVPCNNMLTIVTVRCGHCANLLSANIGSLLQAFPFQDV--QKLQRQQYTNVENNASNYMAYGSSS 90 
                              6899****************************************************996..4444444444444444444443333 PP

                    YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              +s+ +s + +++s+  + e+    p irPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Sme2.5_03411.1_g00006.1  91 SSS-SSSKFNRFSTIVSPEIESRIPPIRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGL 170
                              333.3333445577666666555556*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-719170IPR006780YABBY protein
SuperFamilySSF470951.18E-7115163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-4118164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MTSFSSSSSS ERVCYLQCNF CNTILAVNVP CNNMLTIVTV RCGHCANLLS ANIGSLLQAF  60
PFQDVQKLQR QQYTNVENNA SNYMAYGSSS SSSSSSKFNR FSTIVSPEIE SRIPPIRPPE  120
KRQRVPSAYN QFIKEEIQRI KANNPEISHR EAFSTAAKNW AHFPRIHFGL KLEGNK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677540.0KJ667754.1 Solanum melongena FAS protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234390.11e-104YABBY transcription factor
SwissprotQ9XFB01e-64YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A068FJR71e-125A0A068FJR7_SOLME; FAS protein
STRINGSolyc11g071810.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-56YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]