PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03284.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 426aa    MW: 47438.2 Da    PI: 9.7017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03284.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-056890123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C+k F r  nL+ H r H
  Sme2.5_03284.1_g00006.1 68 FICEVCNKGFQREQNLQLHRRGH 90
                             89*******************88 PP
2zf-C2H212.40.00048144166123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  Sme2.5_03284.1_g00006.1 144 WKCDKCSKKYAVQSDWKAHSKTC 166
                              58*****************9998 PP
3zf-C2H210.70.0017174192523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg+ Fsr++++++H   +
  Sme2.5_03284.1_g00006.1 174 DCGTIFSRRDSFVTHRAFC 192
                              8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-76790No hitNo description
Gene3DG3DSA:3.30.160.604.5E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.996890IPR007087Zinc finger, C2H2
PfamPF121712.0E-56890IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00526890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355120109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-7139164No hitNo description
SMARTSM00355150144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSNLSSGNSS EEADETPNVL SSTSDGSSVH QEQALPNIKK RRKLPGNPDP SAVVMALSPR  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKT SNEIKKRVYI CPESSCIHHN  120
PARALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTKE YKCDCGTIFS  180
RRDSFVTHRA FCDALAEENN KGNQVLASTT QPSATGTSST QLAPDLISRT HMLNLSQIRN  240
PNMKIPQNPL NSMAGSMFSS SSSFNQLGTN SSNMSSATAL LQQAAQMGAA VNNNMNSTMN  300
MVQKGYPSLF NGMQIPNQST LQGFGGSMLQ NIGDDHHKSS RILQNEPGWY DHTNGLINEK  360
QRILNKEAGH SNEKSLTLDF LGIGGMRQRN LHEMHQQQQQ QQEMTTFEQQ KVSQQSIQGV  420
NSVWDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34140198361Zinc finger protein JACKDAW
5b3h_F4e-34140198361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13842KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937771e-166AC193777.1 Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence.
GenBankHG9754401e-166HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-166HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344640.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A0V0I7780.0A0A0V0I778_SOLCH; Putative zinc finger protein JACKDAW-like
STRINGSolyc01g099340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.18e-97C2H2 family protein