PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03284.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 143aa    MW: 16626.7 Da    PI: 4.6053
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03284.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.41.3e-45496395
                    NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                             e+ +++Pianv+rim+++lP  akisk+ake +qec+sefisfvt+easdkc++e+r+t+ngdd++wal++lGf++y+e +  yl k 
  Sme2.5_03284.1_g00004.1  4 EHVKLVPIANVGRIMRQILPPTAKISKEAKERMQECASEFISFVTGEASDKCHKENRRTVNGDDICWALSSLGFDNYAEVMVRYLYKL 91
                             566899********************************************************************************** PP

                    NF-YB 91 releg 95
                             r++e+
  Sme2.5_03284.1_g00004.1 92 RDFER 96
                             ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-436123IPR009072Histone-fold
PfamPF008084.2E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.17E-349123IPR009072Histone-fold
PRINTSPR006154.7E-173654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.7E-175573No hitNo description
PRINTSPR006154.7E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVDEHVKLVP IANVGRIMRQ ILPPTAKISK EAKERMQECA SEFISFVTGE ASDKCHKENR  60
RTVNGDDICW ALSSLGFDNY AEVMVRYLYK LRDFERLRAN QDKVGSNDQD EHNTDDEEAP  120
NEKQETVVPL LEFDIMERMQ RFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-36293192Transcription factor HapC (Eurofung)
4g92_B8e-36293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937771e-124AC193777.1 Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence.
GenBankHG9754401e-124HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-124HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087711.16e-75nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-47NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2G2W7T35e-76A0A2G2W7T3_CAPBA; Nuclear transcription factor Y subunit B-4
STRINGSolyc01g099320.2.15e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-50nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]