PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03275.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 819aa    MW: 91110.1 Da    PI: 4.9171
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03275.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-19103158156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t  q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Sme2.5_03275.1_g00002.1 103 KKRYHRHTVRQIQEMESLFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 158
                              688899***********************************************998 PP
2START152.24.4e-482965231206
                              HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG... CS
                    START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke... 70 
                              ela++ ++elvk+ + +ep+W + + ++ g+evl  +e s+               ++ea r  +vv+m++ +lv  +ld+++   
  Sme2.5_03275.1_g00002.1 296 ELALSSMDELVKMCTTGEPLWIRAP-NDSGKEVLNVEEYSRMfpwpvgvkqngneLRIEATRSNAVVIMNSITLVDAFLDTNKcie 380
                              578999*******************.77777777777666667777889*99******************************9999 PP

                              CT-TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                    START  71 qWdetlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaell 148
                               +   + +a+tl+v++sg      g lqlm++e+q+l+plv+ R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++
  Sme2.5_03275.1_g00002.1 381 LFPSIISRAKTLQVVTSGvsghasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PPPFPYFKRR 465
                              9999999***********************************************99***********99988877.57777777** PP

                              SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              pSg++i++++ng+s+vtwveh++++++ + ++++++v sg+a+ga++w++ lqrqce+
  Sme2.5_03275.1_g00002.1 466 PSGCIIQDMPNGYSRVTWVEHAEVEENPVNQIFNHFVTSGMAFGAQRWLSVLQRQCER 523
                              ********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-2086158IPR009057Homeodomain-like
SuperFamilySSF466896.84E-1891158IPR009057Homeodomain-like
PROSITE profilePS5007116.536100160IPR001356Homeobox domain
SMARTSM003893.0E-18101164IPR001356Homeobox domain
CDDcd000861.83E-17103158No hitNo description
PfamPF000463.1E-17103158IPR001356Homeobox domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084840.825287526IPR002913START domain
SuperFamilySSF559611.74E-32288525No hitNo description
CDDcd088757.67E-115291522No hitNo description
SMARTSM002342.4E-31296523IPR002913START domain
PfamPF018528.0E-40296523IPR002913START domain
SuperFamilySSF559612.33E-17550780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNNNNV SSDSLYSSSF QNPNFNFMTM GGGNNLPFNI FPPNIIPEEN  60
GLFKSKEEMD SGSGSEHIEG MSGNELEPDQ QQQQQQQQQT GKKKRYHRHT VRQIQEMESL  120
FKECPHPDDK QRLKLSQDLG LKPRQVKFWF QNRRTQMKVR IAENDNLKNE NYRLQAALRN  180
IMCPTCGGPA MLGEMGYDEQ QLRLENARLK EEFERVCCLV SQYNGRGPMQ GQGPLTPLLP  240
PSLELDMSIN NFPSKFEDQA NCADMVPVPL LMPDQNNSQF SGGPMILEED KSLAMELALS  300
SMDELVKMCT TGEPLWIRAP NDSGKEVLNV EEYSRMFPWP VGVKQNGNEL RIEATRSNAV  360
VIMNSITLVD AFLDTNKCIE LFPSIISRAK TLQVVTSGVS GHASGSLQLM FMEMQVLTPL  420
VSTRECYFLR YCQQNVEEGS WAIVDFPLDS LHNNFPPPFP YFKRRPSGCI IQDMPNGYSR  480
VTWVEHAEVE ENPVNQIFNH FVTSGMAFGA QRWLSVLQRQ CERIASLMAR NISDLGVIPS  540
PEARKSLMNL AQRMIKTFCM NISTCCGQSW TALSDSPEDT VRITTRKVTE PGQPNGLILS  600
AVSTCWLPYN HFQVFDLLRD ERRRAQLDVL SNGNSLHEVA HIANGSHPGN CMSLLRINVA  660
SNSSQSVELM LQESCTDDSG SLVVYTTVDV DAIQLAMNGE DPSCIPLLPL GFVITPVNGQ  720
TNSDTTNESS EKRQNVDYSG GCLLTVGLQV LASTIPSAKL NLSSVTAINH HLCNTVQQIN  780
AALVAFHPEP EVTAPPPSSS SPPPPQQPES KQVDENSNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-161HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166604.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0V0IWB50.0A0A0V0IWB5_SOLCH; Putative homeobox-leucine zipper protein HDG5-like
STRINGSolyc08g076370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7