PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03237.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 24782.2 Da PI: 7.7085 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.2 | 3.7e-20 | 50 | 105 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++ + +e++++LA++lgL+ qV vWFqNrRa++k+ Sme2.5_03237.1_g00003.1 50 RKRKLLSEEQVNLLERSFGDQHMLEKERKAKLASELGLDPHQVAVWFQNRRARWKN 105 89****************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 107.5 | 1e-34 | 51 | 141 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 k++ ls+eqv+lLE+sF ++ Le+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++a e+ rLe+ev ++ Sme2.5_03237.1_g00003.1 51 KRKLLSEEQVNLLERSFGDQHMLEKERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEATIIEKYRLEAEVLKM 136 66778********************************************************************************* PP HD-ZIP_I/II 88 reelk 92 +e+l Sme2.5_03237.1_g00003.1 137 KEQLC 141 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.621 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-19 | 48 | 110 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-17 | 50 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.46E-16 | 50 | 107 | No hit | No description |
SuperFamily | SSF46689 | 3.18E-18 | 50 | 114 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 50 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-6 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-6 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MIGNKVDDQM ELISQFYPQI YSQLAQEQGE VVKSQRRRKK KKSEGEVVMR KRKLLSEEQV 60 NLLERSFGDQ HMLEKERKAK LASELGLDPH QVAVWFQNRR ARWKNKKLEE EYSKLKTQHE 120 ATIIEKYRLE AEVLKMKEQL CEAEKKIQRL LLEHNYNISS DNSPTSSIFT MEQPHFNLEE 180 LAREGQLMDD NKLFVADYQS NYMTLWDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 41 | QRRRKKKK |
2 | 35 | 41 | RRRKKKK |
3 | 35 | 52 | RRRKKKKSEGEVVMRKRK |
4 | 36 | 41 | RRKKKK |
5 | 38 | 52 | KKKKSEGEVVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-115 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366985.1 | 1e-125 | PREDICTED: homeobox-leucine zipper protein ATHB-21-like | ||||
Swissprot | Q9ZU70 | 7e-58 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M1BIA9 | 1e-117 | M1BIA9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045855 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-55 | homeobox protein 21 |
Publications ? help Back to Top | |||
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