 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_03237.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 167aa MW: 19768.7 Da PI: 10.1203 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03237.1_g00002.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 65.1 | 9.7e-21 | 55 | 110 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
rkR +++eq++ Le+ F ++++ +e++++LA++lgL+ qV vWFqNrRa++k+
Sme2.5_03237.1_g00002.1 55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110
89****************************************************95 PP
|
| 2 | HD-ZIP_I/II | 108.3 | 5.4e-35 | 55 | 139 | 1 | 85 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
+k++ ls+eqv+lLE+sF ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++++ e+ rLe+e +
Sme2.5_03237.1_g00002.1 55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTRHESIIIEKYRLETESR 139
466778**************************************************************************99864 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 167 aa
Download sequence Send
to blast |
MIGRKVDDQM ELISQFYPQI YYQLAQEQGE AVKSQRRRKK KKSEGSSNSN GVMMRKRKLL 60
SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL 120
KTRHESIIIE KYRLETESRL YSTLARLGLA FTEPSLCDLC IREVLFT
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 34 | 41 | QRRRKKKK |
| 2 | 35 | 41 | RRRKKKK |
| 3 | 36 | 41 | RRKKKK |
| 4 | 39 | 57 | KKKSEGSSNSNGVMMRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975442 | 1e-113 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
| GenBank | HG975515 | 1e-113 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
