 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_03205.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 255aa MW: 29281.7 Da PI: 5.9807 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03205.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.3 | 1.1e-17 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
Sme2.5_03205.1_g00003.1 70 KKRRLSLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 123
4558999*********************************************99 PP
|
| 2 | HD-ZIP_I/II | 129.6 | 1.3e-41 | 69 | 160 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrls eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++
Sme2.5_03205.1_g00003.1 69 EKKRRLSLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKN 154
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
L++el+
Sme2.5_03205.1_g00003.1 155 LHSELQ 160
***997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MGFVPGAPEE NDLPPSFPSV FPPSCAPHQE FQGISSVLMR RAMSFDNQDL RGEDIDMSDD 60
DGSSQFLGEK KRRLSLEQVK ALERSFEIGN KLEPERKMQL ARALGLKPRQ IAIWFQNRRA 120
RCKTKQLEKD YEILKRQCDK LKSDNDALKT QNKNLHSELQ LLSLRSRESG TPILFNLNKE 180
NEGSNWNNGS GDDNNSTIID VNLGRTSSTN SPHHVFPTAN YKIEEQTHEE GYCNMFTNVE 240
DQTNYWPMPV QQHFY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 117 | 125 | RRARCKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 1e-149 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
