PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 789aa MW: 87156.1 Da PI: 6.3333

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03143.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Sme2.5_03143.1_g00001.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5678*****************************************************97 PP
2	START	29.9	1.2e-10	163	223	2	62
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHH CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallv 62 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v ++++l+ Sme2.5_03143.1_g00001.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPTRLY 223 7899*************************************************99999876 PP
3	START	99.8	4.8e-32	222	333	98	205
XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 l+a+++l+p Rdf+ Ry+ +++g++v++++S++++q+ p+ +s+vRa lpSg+li+p+++g+s +++v+h+dl+ +++++ Sme2.5_03143.1_g00001.1 222 LYAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 307 789***********************************9998899*********************************** PP HHHHHHHHHHHHHHHHHHHHTXXXXX CS START 180 llrslvksglaegaktwvatlqrqce 205 +lr+l++s++ ++t+va+l+++++ Sme2.5_03143.1_g00001.1 308 VLRPLYESSTLLSQRTTVAALRHLRQ 333 *******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.694	13	77	IPR001356	Homeobox domain
SMART	SM00389	6.8E-16	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-17	17	79	IPR009057	Homeodomain-like
CDD	cd00086	1.44E-16	18	78	No hit	No description
Pfam	PF00046	1.5E-16	19	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.4E-19	20	76	IPR009057	Homeodomain-like
CDD	cd14686	8.58E-6	70	109	No hit	No description
SMART	SM00234	2.0E-14	162	334	IPR002913	START domain
SuperFamily	SSF55961	9.75E-27	163	335	No hit	No description
Pfam	PF01852	2.6E-29	222	333	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.3E-14	227	330	IPR023393	START-like domain
PROSITE profile	PS50848	17.179	228	343	IPR002913	START domain
Pfam	PF08670	1.6E-49	646	788	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MMAVTSSCKD KLGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ 120 QTQTAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV 180 EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RLYAPTTLAP ARDFWLMRYT 240 SVMEDGSLVV CERSLNNTQN GPSMPPVQSF VRADILPSGY LIRPCEGGGS IIHIVDHMDL 300 EPWSVPEVLR PLYESSTLLS QRTTVAALRH LRQISQEISH PTVSGWGRRP AALRALGQRL 360 SKGFNEAVNG FTDEGWSMLE NDGIDDVTIL VNSSPSKLMG ANLSYANGFP SMSSAVLCAK 420 ASMLLQTDQN GQTVVLMLIQ LLQLKLVHVA YQSLELEALV DKSFFRWLTL LNMKRQFMEV 480 IRLESIGHYQ DDIIMPGDIF LLQLCNGVDE NAVGTCAELI FAPIDASFAD DAPLLPSGFR 540 IIPLESKADA SSPNRTLDLA STLEVGPAGS RPTGDHSKNS GSTKSVMTMA FQFAFEIHLQ 600 ESIAAMARQY VRSIISSVQR VALALSPRIG SLPGLRSPPG TPEAQTLARW ICQSYRFFLG 660 VELLKSISGG SDSILKGIWD HSDALMCCSM KALPVFTFAN EAGLDMLETT LVALQDITLE 720 KMFDENGRKA LYSELPQIMQ QGFACLQGGI CLSSMGRPIS YERAVAWKVM NEEEDAHCIC 780 FMFINWSFV

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MMAVTSSCKD KLGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQTAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RLYAPTTLAP ARDFWLMRYT  240
SVMEDGSLVV CERSLNNTQN GPSMPPVQSF VRADILPSGY LIRPCEGGGS IIHIVDHMDL  300
EPWSVPEVLR PLYESSTLLS QRTTVAALRH LRQISQEISH PTVSGWGRRP AALRALGQRL  360
SKGFNEAVNG FTDEGWSMLE NDGIDDVTIL VNSSPSKLMG ANLSYANGFP SMSSAVLCAK  420
ASMLLQTDQN GQTVVLMLIQ LLQLKLVHVA YQSLELEALV DKSFFRWLTL LNMKRQFMEV  480
IRLESIGHYQ DDIIMPGDIF LLQLCNGVDE NAVGTCAELI FAPIDASFAD DAPLLPSGFR  540
IIPLESKADA SSPNRTLDLA STLEVGPAGS RPTGDHSKNS GSTKSVMTMA FQFAFEIHLQ  600
ESIAAMARQY VRSIISSVQR VALALSPRIG SLPGLRSPPG TPEAQTLARW ICQSYRFFLG  660
VELLKSISGG SDSILKGIWD HSDALMCCSM KALPVFTFAN EAGLDMLETT LVALQDITLE  720
KMFDENGRKA LYSELPQIMQ QGFACLQGGI CLSSMGRPIS YERAVAWKVM NEEEDAHCIC  780
FMFINWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	1e-137	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359741.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A3Q7HQY2	0.0	A0A3Q7HQY2_SOLLC; Uncharacterized protein
TrEMBL	M1CUD5	0.0	M1CUD5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400074934	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]