PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03132.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 826aa    MW: 90131.2 Da    PI: 6.3162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03132.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21131186156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Sme2.5_03132.1_g00006.1 131 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 186
                              688999***********************************************999 PP
2START202.22.1e-633385621206
                              HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                    START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                              ela++a++elvk+a+ +ep+W++s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++
  Sme2.5_03132.1_g00006.1 338 ELALAAMDELVKMAQTDEPLWFRSIegvrEILNHEEYIRTFTPCIGmkpnsFVSEASRETGMVIINSLALVETLMDSN-KWAEMFP 422
                              5899**************************************99989***9***************************.******* PP

                              ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                    START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                                  + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +  +++lpSg+
  Sme2.5_03132.1_g00006.1 423 cliaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFPNCRRLPSGC 508
                              *********************************************************************999************** PP

                              EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              ++++++ng+skvtwveh+++++   h l+r+l++ g+ +ga++wvatlqrqce+
  Sme2.5_03132.1_g00006.1 509 VVQDMPNGYSKVTWVEHAEYDEGANHHLYRQLISAGMGFGAQRWVATLQRQCEC 562
                              ****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-20118188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-21118188IPR009057Homeodomain-like
PROSITE profilePS5007117.248128188IPR001356Homeobox domain
SMARTSM003892.2E-17129192IPR001356Homeobox domain
CDDcd000861.88E-18130188No hitNo description
PfamPF000462.0E-18131186IPR001356Homeobox domain
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PROSITE profilePS5084843.397329565IPR002913START domain
SuperFamilySSF559612.66E-31331562No hitNo description
CDDcd088757.95E-123333561No hitNo description
PfamPF018527.6E-55338562IPR002913START domain
SMARTSM002341.3E-48338562IPR002913START domain
SuperFamilySSF559611.1E-23581812No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MNIGGFLDNN SGGGGARIVA DIPFNNNANS SSNSNNKNNN NSSMPTGAIS QPRLVPQSLA  60
KTMFNSAGLS LALQTGMEGQ GEVTRMGENY EGNNSVGRRS REEEPDSRSG SDNLEGASGD  120
EQDAADKPPR KKRYHRHTPQ QIQELESLFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN  180
RRTQMKTQLE RHENSILRQE NDKLRAENMS IREAMRNPIC TNCGGPAMIG EISLEEQHLR  240
IENARLKDEL DRVCALAGKF LGRPISSLVT SMPPPMPNSS LELGVGSNGF GGMSNVPTTL  300
PLAPPDFGVG ISNSLPVVPS TRQSTGIERS LERSMYLELA LAAMDELVKM AQTDEPLWFR  360
SIEGVREILN HEEYIRTFTP CIGMKPNSFV SEASRETGMV IINSLALVET LMDSNKWAEM  420
FPCLIARTST TDVISSGMGG TRNGALQLMH AELQVLSPLV PIREVNFLRF CKQHAEGVWA  480
VVDVSIDTIR ETSGAPTFPN CRRLPSGCVV QDMPNGYSKV TWVEHAEYDE GANHHLYRQL  540
ISAGMGFGAQ RWVATLQRQC ECLAILMSST VSSRDHTAIT PSGRRSMLKL AQRMTNNFCA  600
GVCASTVHKW NKLCAGNVDE DVRVMTRKSV DDPGEPAGIV LSAATSVWLP VSPQRLFDFL  660
RDERLRSEWD ILSNGGPMQE MAHIAKGQDH GNCVSLLRAS AMNANQSSML ILQETCIDAA  720
GALVVYAPVD IPAMHVVMNG GDSAYVALLP SGFSIVPDGP GSRGSNGPSC NGGPDQRISG  780
SLLTVAFQIL VNSLPTAKLT VESVETVNNL ISCTVQKIKA ALQCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2221850.0GQ222185.1 Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234657.20.0cutin deficient 2
RefseqXP_015059298.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A3Q7EKE60.0A0A3Q7EKE6_SOLLC; Uncharacterized protein
STRINGSolyc01g091630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]