PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03124.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 446aa    MW: 49922.9 Da    PI: 8.932
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03124.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.7e-381152682135
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssa 70 
                              a kkdrhski T  g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ el++                   ss++
  Sme2.5_03124.1_g00005.1 115 ASKKDRHSKINTRHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNELVQKmnkekcsgtgtttntegASSPS 200
                              689*************************************************************6655555555444444322223 PP

                      TCP  71 seceaesssssasnsssg.....................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                               +                     +++++  k+ ks++++  ++ +akesr +ar+rarert+ k+++++k
  Sme2.5_03124.1_g00005.1 201 D----------------ScevisgvidesaainitddviDKQQK--KRIKSTRRTIFHRVVAKESRMQARERARERTKIKKSLNDK 268
                              3................133444455555556677864433333..55666666666699******************99988866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-42116263IPR005333Transcription factor, TCP
PROSITE profilePS5136933.614117175IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.198245262IPR017888CYC/TB1, R domain
SuperFamilySSF562199.16E-10300410IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.103.3E-4300445IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MYPSSNYSPN ISSSSSLYHI NIPSPSMQYE PEFIQYFHDL HCIQPALHDQ NNIDTNIMAE  60
GNSDKLDKPE EDQEDQLVLP KGCKNKKEET SSTTTSAIRR KNNKRTASSG AGVGASKKDR  120
HSKINTRHGP RDRRMRLSLE IARKFFNLQD LLGFDKASKT VEWLLTKSKS AVNELVQKMN  180
KEKCSGTGTT TNTEGASSPS DSCEVISGVI DESAAINITD DVIDKQQKKR IKSTRRTIFH  240
RVVAKESRMQ ARERARERTK IKKSLNDKNM NDIGKSMVDD GNSKKSLGSN WSTFEDHQSG  300
KSIELVKCLK RRSINIACVQ ETRWVGTKAR DVDGFKLWYS GGSRGRNGIG ILVDENLREY  360
VVEVRRVNDS GNGEVKRLFW EDLDEVVRGI PEAEKIFIGG DFNGHIGATS SGFDDIHGGF  420
GFGERNDSET SILEFAKAFE LVIANS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229DKQQKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771219.11e-122transcription factor TCP12-like isoform X2
TrEMBLF6KB941e-115F6KB94_SOLTU; BRANCHED1A isoform 1
TrEMBLF6KB951e-115F6KB95_SOLTU; BRANCHED1A isoform 2
TrEMBLM1A4H51e-115M1A4H5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000145721e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.27e-29TCP family protein