PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03119.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 829aa    MW: 92354.7 Da    PI: 8.3605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03119.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-104165327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +++r+G C yG+rC+F+H++
  Sme2.5_03119.1_g00003.1 41 MPDCIHYLRFGVCDYGARCRFNHPR 65
                             789********************96 PP
2zf-CCCH32.12e-1089111527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               C++++rtG Ck+G++Ck++H++
  Sme2.5_03119.1_g00003.1  89 VCQYYMRTGMCKFGASCKYHHPR 111
                              5********************96 PP
3zf-CCCH33.66.4e-11133157327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++++tG+Ck+G +CkF+H++
  Sme2.5_03119.1_g00003.1 133 EKECPRYMKTGQCKFGMTCKFHHPQ 157
                              679********************97 PP
4zf-CCCH35.61.5e-11295320126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++Cr+++++G Ck+G++Ck++H+
  Sme2.5_03119.1_g00003.1 295 PGQPECRYYMQYGDCKFGSSCKYHHP 320
                              5789*********************8 PP
5zf-CCCH33.28.6e-11489513327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++++tG+Ck+G +CkF+H++
  Sme2.5_03119.1_g00003.1 489 EKECSHYMETGQCKFGMTCKFHHPQ 513
                              679********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.16E-53766IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4743866IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-84065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-44465IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-784111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.29584112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-687112IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-789111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-489112IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737130158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8133157IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061294322IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9296320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4300322IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.432433468IPR000571Zinc finger, CCCH-type
SMARTSM003564.9434467IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4486513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502486514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6487514IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8489513IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4492512IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSSGKQPTGQ NSPDEQTGLE DAIWQLSVGS GSTPYPQRFN MPDCIHYLRF GVCDYGARCR  60
FNHPRDRSVA MGARRAAAGE YPQREGQHVC QYYMRTGMCK FGASCKYHHP RHRGESTSLA  120
MPNIHGYPLR PNEKECPRYM KTGQCKFGMT CKFHHPQPAD AQFPASAVAP LPLPEAVQPP  180
TTYPALQSPS VDSAELHGMI AGNWPVVRST LLLGSYFPGT YWSYAISSWN GSHAGLDSLS  240
VPSQTTRSAA GPNPIYRRTQ LSASAPAYTG PHMSVNASIG ASSSNQNESA FPQRPGQPEC  300
RYYMQYGDCK FGSSCKYHHP AERNRTTADL VNAMGLPHDL SLHLSILFLL CPSNPHSERA  360
RKYSISVILL AQVCSISYQF TAFVSTTTTS YPVKSRKWEV EKVNVRRPYH YLIEIERLFP  420
KDPLLNYLVK GNGSKKSCCR RIPQERGSIC LPGMCKSGAS CKYHHPRQRG ESSSLVMPNI  480
HGYPLRPNEK ECSHYMETGQ CKFGMTCKFH HPQPTNAQVP ASAAAPPPLP EAVLPPTTYP  540
ALQSPSVDSA EQHGTIAGNW PVVRPTLLPG SYFPGTYNPM LFPPGMVPMP DWTPYPDSAS  600
PVPSQTTQSA AGPNPIYRRT QLSASAPAYS GPHMSVIASN GASSCTQNES TFPQSPRQPE  660
CHYYMKYGIA IWIFIIIIQL SGVEQMQNLE LRAMDQPECH YYMKYGIANL DLHVSIIIQL  720
SGVEQMQNLE LRAMDQPECH YYMKYGIANL DLHVSIIIQL SGVEQTQILS LVLWIFLLTC  780
SWGFIFFLPF LLVIEIFIAC KFWRLMQEFS LLVSPDIFIV FRIVALALC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.11e-131PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A314KY391e-130A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGPGSC0003DMT4000790191e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.13e-83C3H family protein