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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03119.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26510.6 Da PI: 4.4587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 10 | 60 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g+Wv+e+r p++ r r++lg++++ae+Aa+a +aa +l+g Sme2.5_03119.1_g00002.1 10 PKYKGVRLRK-WGKWVSEVRLPNS---RERIWLGSYDSAEKAARAFDAAQFCLRG 60 79******99.*******999833...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.19E-29 | 10 | 70 | No hit | No description |
Pfam | PF00847 | 4.8E-12 | 10 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-30 | 11 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.338 | 11 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 11 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 11 | 69 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.9E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEGGSPSHQP KYKGVRLRKW GKWVSEVRLP NSRERIWLGS YDSAEKAARA FDAAQFCLRG 60 PKAKFNFPDT HPDISGGQML SPAEIQAVAA RFANDYSHSQ SSGVQEISSQ GNINSHVINV 120 EEEEMSLSST NCEVVQMDTN NNNNNNNNNN NNNNNDNNCT GAEMDGAFYH DMIDNYSYPS 180 SEPFSDPYYP GEGVLGSLSS NLYSPLHFPP RTTPNYDDDD TGNGGDDHCF QQSFLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-15 | 4 | 68 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078978.1 | 2e-96 | ethylene-responsive transcription factor ERF016-like | ||||
Swissprot | Q84QC2 | 3e-45 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | M1D178 | 1e-90 | M1D178_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g054630.1.1 | 2e-95 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-47 | ERF family protein |
Publications ? help Back to Top | |||
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