PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03027.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 844aa    MW: 94314.3 Da    PI: 6.5707
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03027.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22131232199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W +++i+r++++r++l++GW+ Fv++++L +gD +
  Sme2.5_03027.1_g00003.1 131 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWHFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAF 215
                              99*****************************7333.34459********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   + +++el+v+v+r+
  Sme2.5_03027.1_g00003.1 216 IFL--RGENGELRVGVRRA 232
                              ***..449999*****996 PP
2Auxin_resp98.21.2e-32257354183
               Auxin_resp   1 aahaastksvFevvYnP...............rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldp 71 
                              a+ha+++k+ F+v+Y+P               r+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp
  Sme2.5_03027.1_g00003.1 257 AWHAIQMKTLFTVYYKPstgisllhrysimyrRTSPAEFIVPYDQYMESLKTNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADP 342
                              6888888888888888855555555555555467899************************************************* PP

               Auxin_resp  72 vrWpnSkWrsLk 83 
                               rWp+SkWr+Lk
  Sme2.5_03027.1_g00003.1 343 KRWPESKWRCLK 354
                              **********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-40127260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-40128246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335131233IPR003340B3 DNA binding domain
CDDcd100173.25E-20131231No hitNo description
SMARTSM010196.1E-21131233IPR003340B3 DNA binding domain
PfamPF023623.1E-20131232IPR003340B3 DNA binding domain
PfamPF065071.8E-28283354IPR010525Auxin response factor
PfamPF023097.5E-10711803IPR033389AUX/IAA domain
SuperFamilySSF542771.53E-11713795No hitNo description
PROSITE profilePS5174524.355718802IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MSKEMATSES CRNATGAGKD AEKALYTELW RACAGPLVTV PREHELVFYF PQGHIEQVEA  60
STNQASDQQM PVYNLPSKIL CSVVNVLLKA EPDTDEVYAQ VTLLPEPNQD ESAVTKEPMP  120
SPPPRFHVHA FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHANE  180
WHFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQGNAP  240
SSVISSHSMH LGVLATAWHA IQMKTLFTVY YKPSTGISLL HRYSIMYRRT SPAEFIVPYD  300
QYMESLKTNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPKRWPESKW RCLKVRWDEI  360
SAIPRPDRVS PWKVEPALSP PALNPLRQKR PRSNVLPSSP DSSILTREGS SKLTVDPSQA  420
SGFSRVLQGQ EISTLRGNFI ENNELDSSEK PTVWPLLLDD DKANVHSASG RCLSDKWLPS  480
GRPESSYTDL LSGFGGQSSS SHGFHLSTEG QTAPASLVKH QALDKENDFS VLGKQWSLVS  540
SGLSLNLMDS GLKGADTLHQ MLGTSRFNGF NEYPTLPGHR TGNQQRNWLM PHSVLPYIQM  600
STRSGEIMPQ PMVSPLPEAV KPKEGNCKLF GIPLLSKCAS IDHVMLQKNS PIDSTNNMHF  660
GMHPCQFPIT EADQRSEQSK GSKLPDDSIT VNDQEEQLQT SHPGTRDRES KGLVNSTRSC  720
TKVHKQGMAL GRSVDLAKFN NYEELIAELD HLFDFNGELQ ALHKNWLVVY TDDEGDMMLA  780
GDDPWQEFCG MVRKIFIYTK EEVQRMNPGT LNSKDEDNSS VAEGSDAKEV KNLRLPSDSS  840
PEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1692437618354Auxin response factor 1
4ldw_A1e-1692437618354Auxin response factor 1
4ldw_B1e-1692437618354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1439400.0HM143940.1 Solanum lycopersicum auxin response factor 11-like (ARF11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346635.10.0PREDICTED: auxin response factor 2-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLM1B5E80.0M1B5E8_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000374540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]