PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03007.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 982aa MW: 108735 Da PI: 9.3978

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03007.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	790	814	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ f Ck+Gd+C+FaHg Sme2.5_03007.1_g00003.1 790 KTRLCSKFNTAEGCKFGDKCRFAHG 814 8***********************9 PP
2	zf-CCCH	31.1	4e-10	949	973	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ C +Gd+C+FaHg Sme2.5_03007.1_g00003.1 949 YKTKLCENFAK-SSCTFGDKCHFAHG 973 9********.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	7.977	724	751	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	2.1	734	748	No hit	No description
Gene3D	G3DSA:4.10.1000.10	7.0E-13	786	819	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-7	787	818	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	788	816	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-4	788	815	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-6	790	814	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF54791	2.34E-14	853	931	IPR004088	K Homology domain, type 1
SMART	SM00322	2.8E-12	858	928	IPR004087	K Homology domain
PROSITE profile	PS50084	14.194	859	923	IPR004088	K Homology domain, type 1
Gene3D	G3DSA:3.30.1370.10	3.1E-15	859	929	IPR004088	K Homology domain, type 1
CDD	cd00105	2.01E-13	861	923	No hit	No description
Pfam	PF00013	5.3E-10	861	925	IPR004088	K Homology domain, type 1
Gene3D	G3DSA:4.10.1000.10	1.0E-15	945	978	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-8	947	978	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-7	948	974	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.192	948	975	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-7	949	973	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MNQVLAQCLD NVKAMEETHK AMISSMPEEL GRIFRKLESM EEELSLCKRD LAQGSPSMAL 60 AMIDKALKVD MASLYLEDTV IVWWKRRQRD IERGTCSIGT WDEFKTECKK QFYPSNIEEE 120 TKEAFFAFMD GLQQWAKLEI QRWGAQDLTT AISIAESLIE FRKVERPKPR DKGGKKKSEG 180 DLYHGREAAD KVKGSKKHKA VTQVLKEYKD VEPPELLKRL PLKREVDHKI ELVTGATSPT 240 SVSYRMAPLE HKGKPMMPQT MVVGYKGRNS AAYKFANGWQ EKSDLARAHL AKVAQKMKKW 300 ADAKRRHLEF EEGDLVIAKL LPHQSQKFIK VHKGLVRHYE GSFPIKKYIV ITIVPEWDDE 360 EILMRRVIPR CGSYSNYTEY FVKGKGSPDK RGESGIILSG WYLISLKIVK GGYERLCSLG 420 AKGFDFHFFF CEYEFFCRAS MEFGVGRKRG RPQGPMNGNG GFKKSKQDDD AIIGQSDSCG 480 FFLFQDGDLS SNNSSLSFPP FRLLIKAFRI QLCSLHPLGS IRGRLFRSSS VILKSLSEDA 540 RNLTRHQTCG KNLLVPCFGS IQEYMLDMNQ WFGLGTSTLE VSSGKPFASK SKGSALWVEL 600 VASGLPSAVN RLARTIIIIP ENNFNGGWGS FVTKIDHFIN RGVGMPGGAS ISGGCKYQYF 660 KVKGASRKHY LFFGCLILQK GDLARKELTI TVIVVDSGGG GGGVGSYKDR VVAAMDSIIM 720 MEEPVDVDCC STVNFSGCPF GEGCHFLHYV PGGLKAVTQM LGSNPALPTA SRNSIAPPSF 780 PDGSSPPAVK TRLCSKFNTA EGCKFGDKCR FAHGDWELGR PAAPLHEEPH GMFQMHGRYG 840 SRPETNPAGL GAASSFGSSA TAKISVDASL AGRIIGKGGV NSKHICRVTG AKFSIRDHES 900 DPNLRNIELE GTIDQIEQAS RMVRELIQSV TTSAAPLTKN TSSSTSSNYK TKLCENFAKS 960 SCTFGDKCHF AHGAEELRRS GP

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MNQVLAQCLD NVKAMEETHK AMISSMPEEL GRIFRKLESM EEELSLCKRD LAQGSPSMAL  60
AMIDKALKVD MASLYLEDTV IVWWKRRQRD IERGTCSIGT WDEFKTECKK QFYPSNIEEE  120
TKEAFFAFMD GLQQWAKLEI QRWGAQDLTT AISIAESLIE FRKVERPKPR DKGGKKKSEG  180
DLYHGREAAD KVKGSKKHKA VTQVLKEYKD VEPPELLKRL PLKREVDHKI ELVTGATSPT  240
SVSYRMAPLE HKGKPMMPQT MVVGYKGRNS AAYKFANGWQ EKSDLARAHL AKVAQKMKKW  300
ADAKRRHLEF EEGDLVIAKL LPHQSQKFIK VHKGLVRHYE GSFPIKKYIV ITIVPEWDDE  360
EILMRRVIPR CGSYSNYTEY FVKGKGSPDK RGESGIILSG WYLISLKIVK GGYERLCSLG  420
AKGFDFHFFF CEYEFFCRAS MEFGVGRKRG RPQGPMNGNG GFKKSKQDDD AIIGQSDSCG  480
FFLFQDGDLS SNNSSLSFPP FRLLIKAFRI QLCSLHPLGS IRGRLFRSSS VILKSLSEDA  540
RNLTRHQTCG KNLLVPCFGS IQEYMLDMNQ WFGLGTSTLE VSSGKPFASK SKGSALWVEL  600
VASGLPSAVN RLARTIIIIP ENNFNGGWGS FVTKIDHFIN RGVGMPGGAS ISGGCKYQYF  660
KVKGASRKHY LFFGCLILQK GDLARKELTI TVIVVDSGGG GGGVGSYKDR VVAAMDSIIM  720
MEEPVDVDCC STVNFSGCPF GEGCHFLHYV PGGLKAVTQM LGSNPALPTA SRNSIAPPSF  780
PDGSSPPAVK TRLCSKFNTA EGCKFGDKCR FAHGDWELGR PAAPLHEEPH GMFQMHGRYG  840
SRPETNPAGL GAASSFGSSA TAKISVDASL AGRIIGKGGV NSKHICRVTG AKFSIRDHES  900
DPNLRNIELE GTIDQIEQAS RMVRELIQSV TTSAAPLTKN TSSSTSSNYK TKLCENFAKS  960
SCTFGDKCHF AHGAEELRRS GP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246111	0.0	AC246111.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-18b12 map 1, complete sequence.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA845	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	9e-44	C3H family protein