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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_03000.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
LBD |
| Protein Properties |
Length: 230aa MW: 25470.1 Da PI: 7.6748 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_03000.1_g00004.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 119.3 | 2.2e-37 | 7 | 100 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+kll ++p +r +a+ ++ yeA+ar++dPvyG+v++i++lqq
Sme2.5_03000.1_g00004.1 7 PCGACKFLRRKCAADCIFAPYFCSDQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVGTIGYEAQARIKDPVYGCVAHIFTLQQ 92
7*************************99********************************************************** PP
DUF260 86 qleqlkae 93
ql +l++
Sme2.5_03000.1_g00004.1 93 QLWNLEER 100
**999865 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MTSSSSPCGA CKFLRRKCAA DCIFAPYFCS DQGPARFAAI HKVFGASNVS KLLLHVPVPD 60
RCEAVGTIGY EAQARIKDPV YGCVAHIFTL QQQLWNLEER PATTICIPVG PKSFSSVARD 120
EADIEVTLAT QSISKRENFK YLGSSIQSND NIDDDVTHHI GAAWTKWMLA SGILYDKKIP 180
PKLTGKFYRM VVRRLCYMGW SFGQSKTHCA EDAGRGDEDI EIDVWTHQGG
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 2e-32 | 4 | 99 | 8 | 102 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-32 | 4 | 99 | 8 | 102 | LOB family transfactor Ramosa2.1 |
