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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02985.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16341.4 Da PI: 4.9044 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.5 | 2.6e-11 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KK ELSvLCd++++ ii+ +g + ++++ Sme2.5_02985.1_g00002.1 1 MKKTMELSVLCDVKACTIIVDADGSVETWPK 31 8****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.62E-10 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-7 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKKTMELSVL CDVKACTIIV DADGSVETWP KNPSDLNSIL DQYRKRNSRK KQSDNVVVAA 60 EDNPQDVLSK LNSKIEAVEK RIEFLKRKSI TDGCGKEKNS LKKREFHWDG EIELSDNCFA 120 AANNVEEPCP EGYFWDFETG YFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238550.1 | 5e-34 | PREDICTED: uncharacterized protein LOC109218635 | ||||
TrEMBL | A0A1J6K9J0 | 1e-32 | A0A1J6K9J0_NICAT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26880.1 | 2e-07 | AGAMOUS-like 26 |