PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02954.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 389aa    MW: 43045.7 Da    PI: 7.9707
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02954.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29137194260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK v+g+ef+rsYY+Ct++ C++kk+vers+ d+++++i+Y  +H+h+k
  Sme2.5_02954.1_g00006.1 137 EDGYNWRKYGQKLVRGNEFTRSYYKCTHPICRAKKQVERSH-DGHITNIHYIAKHEHPK 194
                              7****************************************.***************85 PP
2WRKY105.13.6e-33314371259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vkg+++prsYYrC+s+gCp+kk+ver+++dpk+v++ Yeg+H+h+
  Sme2.5_02954.1_g00006.1 314 NDGYRWRKYGQKFVKGNPNPRSYYRCSSSGCPAKKHVERASHDPKLVITAYEGQHDHD 371
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-25129195IPR003657WRKY domain
PROSITE profilePS5081121.93131195IPR003657WRKY domain
SuperFamilySSF1182903.14E-22134195IPR003657WRKY domain
SMARTSM007741.9E-30136194IPR003657WRKY domain
PfamPF031066.9E-22137193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-35299373IPR003657WRKY domain
SuperFamilySSF1182904.18E-29306373IPR003657WRKY domain
PROSITE profilePS5081135.99308373IPR003657WRKY domain
SMARTSM007748.7E-38313372IPR003657WRKY domain
PfamPF031061.2E-26314370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGISMDDVPQ SNQEDSPLSN VPEKDTEKVH QKKGPESEGG ASESGRVPVL PKKEPYIKSS  60
KSDSPVKDGN SSLVPGKASD FPQQIQIQKM EEVISQSHQE PVTSSTGENA LNKLQPRRDP  120
DTSIQDSSSD HAEKTSEDGY NWRKYGQKLV RGNEFTRSYY KCTHPICRAK KQVERSHDGH  180
ITNIHYIAKH EHPKPLNSPQ ISPELVKPSE MRRPDMPTGK PREGEKSTAL GEACQSIEPS  240
ESLISAAVVS AGGSVPDTVL KPLKSGDEGD NNGSRNLKRR KKEVPTSDDM SPPPKSPSEP  300
RHIVETRSEV DIINDGYRWR KYGQKFVKGN PNPRSYYRCS SSGCPAKKHV ERASHDPKLV  360
ITAYEGQHDH DIPPSRTVMQ NSAEAESTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-35138374275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-129HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363023.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ9SI376e-70WRKY1_ARATH; WRKY transcription factor 1
TrEMBLM1A6I40.0M1A6I4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000157540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.28e-71zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]