PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02909.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 869aa MW: 96844.8 Da PI: 9.6718 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 173 | 193 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa+ G C++G+ C+F H+ Sme2.5_02909.1_g00006.1 173 VCRNFAA-GNCRRGSECRFVHP 193 6******.*************9 PP | |||||||
2 | zf-CCCH | 21.3 | 4.6e-07 | 256 | 278 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t Cr+fa+ G C+ G++C+F+H+ Sme2.5_02909.1_g00006.1 256 TITCRNFAK-GNCRWGASCRFSHD 278 668******.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.925 | 169 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 170 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 172 | 192 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-6 | 173 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 253 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 256 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 256 | 278 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.432 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.96 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.06 | 310 | 327 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 869 aa Download sequence Send to blast |
MGESAKRRKS LWDAEEESPN SPKLVEWGAP KADSSWQSKS RSGWSSGDNV TGTEELRKEN 60 YHYKSMSPAF ERRGRRSNSH SPDNGRAQSR RYPGRARSRS RSRSRSRTRS RGRGEGRSRS 120 RSRGRDRFRT RSRSRDRGCM RVQNRSRSPL YNSKRDSYAS GDRRTGLHMS SQVCRNFAAG 180 NCRRGSECRF VHPDGASHRD GGHSEDNLTE RLGSRPERGH ISRYNDSEGP VYQSRDRLPD 240 MHHLEDEMHR NRSRGTITCR NFAKGNCRWG ASCRFSHDGA SGDNYDKGIR SASFDHGQDN 300 QATRTGKSLC EYFAAGKCYK DNCKFSHDAT SRNHEMRPSD DIGGHRFDDK NNWLNGPKWD 360 NEARPSDLVN ASGWDESVVR KDTAVTVLTD RTCERPGHSI ENENRTWGTE PQFMNSDRER 420 GVSPHRGSAS HLNALNISES SVIQNFSNAQ DIHLTSHASD LNIERTSAHG VGHNSNQGAS 480 GTILSAATAT QPYGSAGSFV QPQGLTEDSI ARTLGSNAVN EFMNTRDSVH HVRLPGQSFS 540 GTGIGMSSEH SAVLNGTHQE QNVFLPVPST GLNKREALGT PEMLEFKVPQ NLSGAAAGEQ 600 VHPMETSPTS MIKKFEEGLR EAQRQSVLNA SGPSGMLPSN QISSLVHALY GQTNPEMRVP 660 DNYHPPDGLE LNTSGNFKLP PDNSFYLDRD SNKAPMEQMN QSSTVGPELG NNGQIDEVKQ 720 QENKLVEVDG KDKLAPEQSK DVQKNDHPGA VNLLGKVEEG STNRDEKVMR LFKNALIEFV 780 KEILKPTWKE GKMSREVHKT VVKKVVDKVT SAIPGEQLPK TQEKIEQYLS YSKPKITKLV 840 QEWEKPKLEV AIRLLVTIKS TAAQDVSPV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 136 | RFRTRSRSRDR |
2 | 128 | 136 | RTRSRSRDR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356284.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_006356285.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_015168257.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | M1CB95 | 0.0 | M1CB95_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063799 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |