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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02903.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25224.2 Da PI: 4.9092 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 23 | 73 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ ++ +e+ +LA+ lgL+ rqV +WFqN+Ra++k Sme2.5_02903.1_g00007.1 23 RFTDEQVKLLESMFKIGTKIEPREKLKLARDLGLQPRQVAIWFQNKRARWK 73 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.6 | 6.1e-37 | 21 | 110 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+++eqvklLE++F+ +k+ep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L Sme2.5_02903.1_g00007.1 21 VKRFTDEQVKLLESMFKIGTKIEPREKLKLARDLGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSKFDNLNMQYESLKAEKERLL 106 58***********************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 el+ Sme2.5_02903.1_g00007.1 107 IELE 110 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.374 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-17 | 17 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-18 | 20 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 22 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-15 | 23 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-14 | 23 | 76 | No hit | No description |
PRINTS | PR00031 | 1.4E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.9E-13 | 75 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEPELETSNF KKPLKKKCEN VKRFTDEQVK LLESMFKIGT KIEPREKLKL ARDLGLQPRQ 60 VAIWFQNKRA RWKSKQLEHE YRILQSKFDN LNMQYESLKA EKERLLIELE TLNDQVENSN 120 ARGSTSQDSR DSELHTSPEN GFTDLELKDC SGCTNSRFGH KSVNEEEDDA IEGTDKFFTP 180 KEEAEFWNLE ELGDNNSLEH WCVGLGSISN SKLWDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY368484 | 0.0 | AY368484.1 Capsicum annuum HD-ZIP (HD-Zip) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350490.1 | 1e-129 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 2e-36 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | M1BL44 | 1e-128 | M1BL44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047622 | 1e-128 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 7e-39 | homeobox 7 |
Publications ? help Back to Top | |||
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