PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02819.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 311aa    MW: 35593.4 Da    PI: 9.6194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02819.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.5e-11671411288
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              +++ +++pk+fa  ++ +  ++ +l+++de+ rs ++++  + ++ ++++++G ++F  +n Lk gD ++F+++ + 
  Sme2.5_02819.1_g00001.1  67 STSPVCVPKHFACVNDFIADKKYDLIIKDETQRSSNLRI--NSCKIQVYIGEGFRKFIADNCLKKGDRIMFEVVTDG 141
                              5556789****9999777788899***************..*******************************87643 PP
2B346.75.8e-15193272587
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +++s++l+ + +++p  fa++ g+ +++  +++l de+ rsW++ l     + ++ ++kGW++F kang ++gD   F+l+++
  Sme2.5_02819.1_g00001.1 193 TIKSYTLQMSAVYIPMAFARSTGLMNRR-CEIILIDEKRRSWSMWL--GYMGHHFGIKKGWRQFTKANGFRVGDAYKFELINN 272
                              568999999*************877655.59***************..55555699***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.5852152IPR003340B3 DNA binding domain
PROSITE profilePS508637.13356151IPR003340B3 DNA binding domain
PfamPF023622.4E-866143IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-967146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-868148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-19183277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-19183278IPR015300DNA-binding pseudobarrel domain
CDDcd100179.07E-15188271No hitNo description
PROSITE profilePS5086313.155189283IPR003340B3 DNA binding domain
SMARTSM010191.5E-13190284IPR003340B3 DNA binding domain
PfamPF023628.4E-13193272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MCKCTSVEKI PKGFLKYLKG LDHIDRAILK WLVKLNGHRL EDGWKKFAEE RFAGFVLTRG  60
SIGNNLSTSP VCVPKHFACV NDFIADKKYD LIIKDETQRS SNLRINSCKI QVYIGEGFRK  120
FIADNCLKKG DRIMFEVVTD GETPIWQFHV VADAKTPMRK FQGCRVKSSD VTAPKLEVSA  180
STFGDDNPHF ISTIKSYTLQ MSAVYIPMAF ARSTGLMNRR CEIILIDEKR RSWSMWLGYM  240
GHHFGIKKGW RQFTKANGFR VGDAYKFELI NNAKIPIAYI SPMLVECGRC FENKSKIFTE  300
NFENVCTSEI T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454036.11e-76PREDICTED: B3 domain-containing protein REM10-like isoform X1
RefseqXP_016454039.17e-77PREDICTED: B3 domain-containing protein REM10-like isoform X4
TrEMBLA0A1S3YP492e-75A0A1S3YP49_TOBAC; B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1S3YP692e-75A0A1S3YP69_TOBAC; B3 domain-containing protein REM10-like isoform X4
STRINGXP_009781490.14e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-22B3 family protein