PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02806.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 330aa MW: 35828.8 Da PI: 8.5076 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 7.7e-33 | 56 | 112 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v Y+eClkNhAaslG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRr++e Sme2.5_02806.1_g00002.1 56 VVIYRECLKNHAASLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRRDPE 112 589***************************9999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-27 | 57 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.239 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-22 | 59 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-29 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.57E-17 | 185 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-28 | 187 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.0E-25 | 196 | 253 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDLSTNATTT AAAAATSSAI KTPELAETEI PSRIQQPKSF PFSNGVFKHK NHHPVVVIYR 60 ECLKNHAASL GTHAVDGCGE FLPIPAANPA DPTSLKCAAC GCHRNFHRRD PEEPPPIATA 120 ALEYQPHHRH HPPPPRGDHS SPNSSPSPPP ISSAYYPASA PHMLLALSAG FSGEKNPNPN 180 PPTPTPSPAV GNANGRKRFR TKFTPDQKVK MLEFAEKVEW KMQKRDEDLV NNFCNEIGVE 240 KGVLKVWMHN NKNTSGSGKK LDQSSTGHQN GNTNNVVNGF CIVTKNKTHH DNTDSEFHLH 300 HESSMNDNKK GFSSFDANNF VATNGSSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-20 | 197 | 257 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357111.1 | 1e-173 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SEZ1 | 3e-63 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A0V0HXL6 | 1e-172 | A0A0V0HXL6_SOLCH; Putative transcription factor HB29-like | ||||
TrEMBL | M1A9K2 | 1e-172 | M1A9K2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017840 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 9e-59 | homeobox protein 34 |
Publications ? help Back to Top | |||
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