PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02806.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 332aa MW: 36547.5 Da PI: 8.3293

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02806.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110	1.3e-34	53	110	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v Y+eClkNhAaslGghavDGCgEf+ps++++ +++++lkCaACgCHRnFHRre+ee Sme2.5_02806.1_g00001.1 53 VVIYRECLKNHAASLGGHAVDGCGEFLPSPTANpSDPTSLKCAACGCHRNFHRREPEE 110 589***************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	54	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.9E-29	54	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.9E-31	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.084	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.29E-18	181	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-29	183	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.6E-25	193	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDLTNNTATT TTTTVKTSEP EIETPSQIQK LKPFPSSNGV LKRKNPLQHH PVVVIYRECL 60 KNHAASLGGH AVDGCGEFLP SPTANPSDPT SLKCAACGCH RNFHRREPEE PLVITPPPIA 120 TAVLEYQPHH RHHPPPPPPR GDHSSPNSPS PPPISSAYYP ASAPHMLLAL SAGFSGEKNP 180 NPTSAPVTNS NGRKRFRTKF TPDQKVKMLE FSERVGWKMQ KRDEDLVTNF CNEIGVEKGV 240 LKVWMHNNKN TFGKKSDQPI SGDDDSHHQN GNTNNFNGFC IVSRNNNHNN TDSEFHQQQQ 300 QHESNSDNKK GIIHHLHTSD SVVATNGSSS SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-20	194	251	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015067108.1	1e-167	zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	3e-68	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	M1B0K2	1e-165	M1B0K2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034368	1e-165	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-68	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]