PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02788.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 536aa MW: 57415 Da PI: 7.2841

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02788.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.6	1.5e-40	141	245	2	112
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s Sme2.5_02788.1_g00002.1 141 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLS 226 56799****************************************************************99977777777777444 PP TCP 87 sgkaaksaakskksqksaasalnlak 112 ++ +sk++++s +sal+la+ Sme2.5_02788.1_g00002.1 227 AP-------PSKSAPHSFHSALALAA 245 44.......33333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-38	146	240	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	147	201	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MELTDLQNNN TNSTSKQQTT TNNTTPSPPL HHQHQHQHQY QLLSQHHHQQ QLQQQHGRSF 60 MSSISIQPSA PPGLTNSASP TATSASPSTS SPTPPQQQQQ QPPHLVDASL AIATRSDSII 120 DPNKNSQPQQ QLAIQQVQQQ PPPKRQTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH 180 KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHSA 240 LALAAAQHTS HPFEEGFPHM LGFHHNTHLL PQNPIAESIP GGGGGGGGSS GDGGGGGGQE 300 GADNYLRKRY REDLFKEEGS SNPQGEASGG SNSPSNKQFK GHSSQLPNKP NPQEGVAGPS 360 SNMLRHTNMM PATGLWAVAP PPSSGTTGSP FWMLPVTASG SGQTLSAPMA STSGTTTLES 420 QMWPFPIGSS NTIQAPLHFM SRFNIPPNLE FQSGRGNPLQ LGSMLMQQQQ PSQHLGLGMS 480 ETNLGMLAAL NAYSRGGLNM NSDHQQTHSL EHQQQQHQQH QPQPTDSEED DPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MELTDLQNNN TNSTSKQQTT TNNTTPSPPL HHQHQHQHQY QLLSQHHHQQ QLQQQHGRSF  60
MSSISIQPSA PPGLTNSASP TATSASPSTS SPTPPQQQQQ QPPHLVDASL AIATRSDSII  120
DPNKNSQPQQ QLAIQQVQQQ PPPKRQTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH  180
KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHSA  240
LALAAAQHTS HPFEEGFPHM LGFHHNTHLL PQNPIAESIP GGGGGGGGSS GDGGGGGGQE  300
GADNYLRKRY REDLFKEEGS SNPQGEASGG SNSPSNKQFK GHSSQLPNKP NPQEGVAGPS  360
SNMLRHTNMM PATGLWAVAP PPSSGTTGSP FWMLPVTASG SGQTLSAPMA STSGTTTLES  420
QMWPFPIGSS NTIQAPLHFM SRFNIPPNLE FQSGRGNPLQ LGSMLMQQQQ PSQHLGLGMS  480
ETNLGMLAAL NAYSRGGLNM NSDHQQTHSL EHQQQQHQQH QPQPTDSEED DPNNSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349348.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	M1CBU2	0.0	M1CBU2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400064164	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-53	TCP family protein